Construct: ORF ccsbBroadEn_15196
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018918.1_s300c1, BRDN0000458214
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- CARD11 (84433)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84433 | CARD11 | caspase recruitment domain ... | NM_001324281.2 | 98.6% | 21.7% | (many diffs) |
| 2 | human | 84433 | CARD11 | caspase recruitment domain ... | NM_032415.6 | 98.6% | 21.7% | (many diffs) |
| 3 | mouse | 108723 | Card11 | caspase recruitment domain ... | NM_175362.2 | 85.9% | 21.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 98
- ORF end:
- 863
- ORF length:
- 765
- Sequence:
-
1 ATGGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT 61 TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCACCATG GATGACTACA TGGAGACGCT 121 GAAGGATGAA GAGGACGCCT TGTGGGAGAA TGTGGAGTGT AACCGGCACA TGCTCAGCCG 181 CTATATCAAC CCTGCCAAGC TCACGCCCTA CCTGCGTCAG TGTAAGGTCA TTGATGAGCA 241 GGATGAAGAT GAAGTGCTTA ATGCCCCTAT GCTGCCATCC AAGATCAACC GAGCAGGCCG 301 GCTGTTGGAC ATTCTACATA CCAAGGGGCA AAGGGGCTAT GTGGTCTTCT TGGAGAGCCT 361 AGAATTTTAT TACCCAGAAC TGTACAACTT GGTGACTGGG AAAGAGCCCA CTCGGAGATT 421 CTCCACCATT GTGGTGGAGG AAGGCCACGA GGGCCTCACG CACTTCCTGA TGAACGAGGT 481 CATCAAGCTG CAGCAGCAGA TGAAGGCCAA GGACCTGCAA CGCTGCGAGC TGCTGGCCAG 541 GTTGCGGCAG CTGGAGGATG AGAAGAAGCA GATGACGCTG ACGCGCGTGG AGCTGCTAAC 601 CTTCCAGGAG CGGTACTACA AGATGAAGGA AGAGCGGGAC AGCTACAATG ACGAGCTGGT 661 CAAGGTGAAG GACGACAACT ACAACTTAGC CATGCGCTAC GCACAGCTCA GTGAGGAGAA 721 GAACATGGCG GTCATGAGGA GCCGAGACCT CCAACTCGAG ATCGATCAGC TAAAGCACCG 781 GTTGAATAAG ATGGAGGAGG AATGTAAGCT GGAGAGAAAT CAGTCTCTAA AACTGAAGAA 841 TGACATTGAA ATCGGCCCAA GATGAGCAGT CTGGAACTGG AGCGGGGAGA ATGAAATGCT 901 GAAGACCAAA AACCAGGAGC TGCAGTccat catccaggcc gggaagcgca gcctgccaga 961 ctcagacaag gccatcctgg acatcttgga acacgaccgc aaggaggccc tggaggacag 1021 gcaggagctg gtcaacagga tctacaacct gcaggaggag gcccgccagg cagaggagct 1081 gcgagacaag tacctggagg agaaggagga cctggagctc aagtgctcga ccctgggaaa 1141 ggactgtgaa atgtacaagc accgcatgaa cacggtcatg ctgcagctgg aggaggtgga 1201 gcgggagcgg gaccaggcct tccactcccg agatgaagct cagacacagt actcgcagtg 1261 cttaatcgaa aaggacaagt acaggaagca gatccgcgag ctggaggaga agaacgacga 1321 gatgaggatc gagatggtgc ggcgggaggc ctgcatcgtc aacctggaga gcaagctgcg 1381 gcgcctctcc aaggacagca acaacctgga ccagagtctg cccaggaacc tgccagtaac 1441 catcatctct caggactttg gggatgccag ccccaggacc aatggtcaag aagctgacga 1501 ttcttccacc tcggaggagt cacctgaaga cagcaagtac ttcctgccct accatccgcc 1561 ccagcgcagg atgaacctga agggcatcca gctgcagaga gccaaatccc ccatcagcct 1621 gaagcgaaca tcagattttc aagccaaggg gcacgaggaa gaaggcacgg acgccagccc 1681 tagctcctgc ggatctctgc ccatcaccaa ctccttcacc aagatgcagc ccccccggag 1741 ccgcagcagc atcatgtcaa tcaccgccga gcccccggga aacgactcca tcgtcagacg 1801 ctacaaggag gacgcgcccc atcgcagcac agtcgaagaa gacaatgaca gcggcgggtt 1861 tgacgcctta gatctggatg atgacagtca cgaacgctac tccttcggac cctcctccat 1921 ccactcctcc tcctcctccc accaatccga gggcctggat gcctacgacc tggagcaggt 1981 caacctcatg ttcaggaagt tctctctgga aagacccttc cggccttcgg tcacctctgt 2041 ggggcacgtg cggggcccag ggccctcggt gcagcacacg acgctgaatg gcgacagcct 2101 cacctcccag ctcaccctgc tggggggcaa cgcgcgaggg agcttcgtgc actcggtcaa 2161 gcctggctct ctggccgaga aagccggcct ccgtgagggc caccagctgc tgctgctaga 2221 aggctgcatc cgaggcgaga ggcagagtgt cccgttggac acatgcacca aagaggaagc 2281 ccactggacc atccagaggt gcagcggccc cgtcacgctg cactacaagg tcaaccacga 2341 agggtaccgg aagctggtga aggacatgga ggacggcctg atcacatcgg gggactcgtt 2401 ctacatccgg ctgaacctga acatctccag ccagctggac gcctgcacca tgtccctgaa 2461 gtgtgacgat gttgtgcacg tccgtgacac catgtaccag gacaggcacg agtggctgtg 2521 cgcgcgggtc gaccctttca cagaccatga cctggatatg ggcaccatac ccagctacag 2581 ccgagcccag cagctcctcc tggtgaaact gcagcgcctg atgcaccgag gcagccggga 2641 ggaggtagac ggcacccacc acaccctgcg ggcactccgg aacaccctgc agccggaaga 2701 agcgctttca acaagcgacc cccgggtCAG CCCCGTTTCT CGGGAGCAAG CTCCTTTTTG 2761 CCCAGCTCCT TCAGTTCGTC AGCAGTCGAG AAAACAAGTA TAAGCGGATG AACAGCAACG 2821 AGCGGGTCCG CATCATCTCG GGGAGTCGCT ANGGGAGCCT GGCCCGGGTC CTCGCTGACG 2881 CCCACCAAGC TCTGNACTGA GAAGCAGGAA GAGCTGGACC CTGAGAGCGA GCTGGGCAAG 2941 AACCTCAGCC TCATCCCCTA CAGCCTGGTA CGCGCCTTCT ACTGCGAGCG CCGCCGGCCC 3001 GTGCTCTTCA CACCCACCGT GCTGGCCAAG ACGCTGGTGC AGAGGCTGCT CAACTCGGGA 3061 GGTGCCATGG AGTTCACCAT CTGCAAGTCA GATATCGTCA CAAGAGATGA GTTCCTCAGA 3121 AGGCAGAAGA CGGAGACCAT CATCTACTCC CGAGAGAAGA ACCCCAACGC GTTCGAATGC 3181 ATCGCCCCTG CCAACATTGA AGCTGTGGCC GCCAAGAACA AGCACTGCCT GCTGGAGGCT 3241 GGGATCGGCT GCACAAGAGA CTTGATCAAG TCCAACATCT ACCCCATCGT GCTCTTCATC 3301 CGGGTGTGTG AGAAGAACAT CAAGAGGTTC AGAAAGCTGC TGCCCCGACC TGAGACGGAG 3361 GAGGAGTTCC TGCGCGTGTG CCGGCTGAAG GAGAAGGAGC TGGAGGCCCT GCCGTGCCTG 3421 TACGCCACGG TGGAACCTGA CATGTGGGGC AGCGTAGAGG AGCTGCTCCG CGTTGTCAAG 3481 GACAAGATCG GCGAGGAGCA GCGCAAGACC ATCTGGGTGG ACGAGGACCA GCTGTTGCCA 3541 ACTTTCTTGT ACAAAGTTGG CATTATAAGA AAGCATTGCT TATCAATTTG TTGCAACGAA 3601 CAGGTCACTA TCAGTCAAAA TAAAATCATT ATTGCCATCC AAGCTGAATC CCCC