Construct: ORF ccsbBroadEn_15223
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003017.1_s300c1, BRDN0000398158
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC2A13 (114134)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 114134 | SLC2A13 | solute carrier family 2 mem... | NM_052885.4 | 97% | 97% | 1_57del;975T>C |
| 2 | human | 114134 | SLC2A13 | solute carrier family 2 mem... | XM_011537847.2 | 90.5% | 90.5% | 1_57del;975T>C;1316_1317ins126 |
| 3 | human | 114134 | SLC2A13 | solute carrier family 2 mem... | XM_017018764.1 | 72.9% | 72.9% | 0_1ins510;408T>C |
| 4 | human | 114134 | SLC2A13 | solute carrier family 2 mem... | XM_017018765.1 | 72.9% | 72.9% | 0_1ins510;408T>C |
| 5 | human | 114134 | SLC2A13 | solute carrier family 2 mem... | XM_011537849.2 | 65.1% | 65.2% | (many diffs) |
| 6 | human | 114134 | SLC2A13 | solute carrier family 2 mem... | XM_011537850.3 | 65.1% | 64.7% | (many diffs) |
| 7 | human | 114134 | SLC2A13 | solute carrier family 2 mem... | XM_017018766.1 | 64.8% | 64.8% | 0_1ins663;255T>C |
| 8 | human | 114134 | SLC2A13 | solute carrier family 2 mem... | XR_001748568.1 | 63.6% | (many diffs) | |
| 9 | human | 114134 | SLC2A13 | solute carrier family 2 mem... | XR_001748567.2 | 25.1% | (many diffs) | |
| 10 | mouse | 239606 | Slc2a13 | solute carrier family 2 (fa... | NM_001033633.3 | 81.2% | 85.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1956
- ORF length:
- 1887
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGCGAGCGG CGCAGGAAGC AGCCGGAGCC GGACGCGGCG AGCGCGGCCG 121 GGGAGTGCAG CCTCCTGGCT GCcgccgaat cgagcaccag cctgcagagc gcgggcgcgg 181 gcggcgGCGG CGTCGGGGAC CTGGAGCGCG CGGCGCGGCG GCAGTTCCAG CAGGACGAGA 241 CCCCCGCCTT CGTGTACGTG GTGGCCGTCT TCTCCGCGCT GGGCGGCTTC CTGTTTGGCT 301 ATGACACCGG GGTGGTGTCA GGGGCCATGC TGCTGCTCAA GCGGCAGCTC AGTCTGGACG 361 CGCTGTGGCA GGAGCTGCTG GTGTCCAGCA CGGTGGGGGC GGCTGCCGTC TCGGCGCTGG 421 CCGGAGGCGC CCTCAACGGC GTCTTCGGCC GCCGCGCTGC CATCCTCCTG GCCAGTGCCC 481 TCTTCACCGC CGGCTCCGCG GTGCTGGCTG CGGCCAACAA CAAGGAGACA CTGCTCGCCG 541 GCCGCCTGGT CGTGGGACTC GGCATCGGCA TTGCTTCTAT GACAGTGCCA GTGTACATTG 601 CGGAGGTCTC ACCACCCAAT TTAAGAGGCC GATTAGTCAC CATTAATACC CTCTTCATCA 661 CAGGAGGGCA GTTCTTTGCA AGTGTTGTTG ATGGAGCCTT CAGTTATCTC CAGAAGGATG 721 GATGGAGGTA CATGTTGGGA CTTGCAGCAG TTCCGGCGGT TATACAGTTT TTTGGCTTTC 781 TCTTTTTGCC TGAAAGCCCT CGATGGCTTA TTCAGAAAGG ACAGACTCAG AAGGCCCGTA 841 GAATTTTATC TCAGATGCGT GGTAACCAGA CCATTGATGA GGAATATGAT AGCATCAAAA 901 ACAACATTGA AGAGGAGGAA AAAGAGGTTG GCTCAGCTGG ACCTGTGATC TGCAGAATGC 961 TGAGTTATCC CCCAACTCGC CGAGCCTTAA TTGTGGGTTG TGGCCTACAA ATGTTCCAGC 1021 AGCTCTCAGG CATTAACACC ATCATGTACT ACAGTGCAAC CATTCTGCAG ATGTCTGGTG 1081 TTGAAGATGA TAGACTTGCA ATATGGCTGG CTTCAGTTAC AGCCTTCACA AATTTCATTT 1141 TCACACTTGT GGGAGTCTGG CTTGTTGAGA AGGTGGGCCG CAGAAAGCTT ACCTTTGGTA 1201 GTTTAGCAGG TACCACCGTA GCACTCATTA TTCTTGCCTT GGGATTTGTG CTATCAGCCC 1261 AAGTTTCCCC ACGCATCACT TTTAAGCCAA TAGCTCCGTC AGGTCAGAAC GCCACTTGCA 1321 CAAGATACAG TTACTGTAAT GAATGTATGT TGGATCCAGA CTGCGGTTTC TGCTACAAGA 1381 TGAACAAATC AACTGTCATT GACTCCTCCT GTGTTCCAGT TAATAAAGCA TCTACAAATG 1441 AGGCAGCCTG GGGCAGGTGT GAAAATGAAA CCAAGTTCAA AACAGAAGAT ATATTTTGGG 1501 CTTACAATTT CTGCCCTACT CCATACTCCT GGACTGCACT TCTGGGCCTT ATTTTATATC 1561 TTGTCTTCTT TGCACCTGGA ATGGGACCAA TGCCTTGGAC TGTGAATTCT GAAATATATC 1621 CCCTTTGGGC AAGAAGTACA GGAAATGCAT GTTCATCTGG AATAAACTGG ATTTTCAATG 1681 TCCTGGTTTC ACTAACATTT TTACACACAG CAGAGTATCT TACATACTAT GGAGCTTTCT 1741 TCCTCTATGC TGGATTTGCT GCTGTGGGAC TCCTTTTCAT CTATGGCTGT CTTCCTGAGA 1801 CCAAAGGCAA AAAATTAGAG GAAATTGAAT CACTCTTTGA CAACAGGCTA TGTACATGTG 1861 GCACTTCAGA TTCTGATGAA GGGAGATATA TTGAATATAT TCGGGTAAAG GGAAGTAACT 1921 ATCATCTTTC TGACAATGAT GCTTCTGATG TGGAATTGCC AACTTTCTTG TACAAAGTtg 1981 gcattataag aaagcattgc ttatcaattt gttgcaacga ac