Transcript: Human XM_017018765.1

PREDICTED: Homo sapiens solute carrier family 2 member 13 (SLC2A13), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC2A13 (114134)
Length:
5181
CDS:
730..2109

Additional Resources:

NCBI RefSeq record:
XM_017018765.1
NBCI Gene record:
SLC2A13 (114134)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017018765.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000042860 CCCAATTTAAGAGGCCGATTA pLKO.1 766 CDS 100% 10.800 15.120 N SLC2A13 n/a
2 TRCN0000042861 GCACAAGATACAGTTACTGTA pLKO.1 1469 CDS 100% 4.950 6.930 N SLC2A13 n/a
3 TRCN0000419746 GTGCTAATCTAGCCAAATTAC pLKO_005 2456 3UTR 100% 13.200 10.560 N SLC2A13 n/a
4 TRCN0000430743 CCTCCTGTGTTCCAGTTAATA pLKO_005 1556 CDS 100% 15.000 10.500 N SLC2A13 n/a
5 TRCN0000414297 GCCTTCCTGAAATAGTCTAAA pLKO_005 2357 3UTR 100% 13.200 9.240 N SLC2A13 n/a
6 TRCN0000434361 GTCCTGGTTTCACTAACATTT pLKO_005 1831 CDS 100% 13.200 9.240 N SLC2A13 n/a
7 TRCN0000042862 CTTCAGTTACAGCCTTCACAA pLKO.1 1262 CDS 100% 4.950 3.465 N SLC2A13 n/a
8 TRCN0000042859 GCCGAGCTTTAATTGTGGGTT pLKO.1 1130 CDS 100% 2.640 1.848 N SLC2A13 n/a
9 TRCN0000042858 GCAGAGTATCTTACATACTAT pLKO.1 1861 CDS 100% 0.563 0.394 N SLC2A13 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017018765.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14356 pDONR223 99.2% 72.9% 72.9% None 0_1ins510 n/a
2 ccsbBroad304_14356 pLX_304 0% 72.9% 72.9% V5 0_1ins510 n/a
3 TRCN0000472241 AAACTTCGACTGGCCTCAATTTTT pLX_317 21.9% 72.9% 72.9% V5 0_1ins510 n/a
4 ccsbBroadEn_15223 pDONR223 97.6% 72.9% 72.9% None 0_1ins510;408T>C n/a
5 ccsbBroad304_15223 pLX_304 0% 72.9% 72.9% V5 0_1ins510;408T>C n/a
6 TRCN0000475482 AACTTAGCGGCCGTGTTTGGTCTT pLX_317 19.6% 72.9% 72.9% V5 0_1ins510;408T>C n/a
7 ccsbBroadEn_13031 pDONR223 100% 26% 25.5% None (many diffs) n/a
8 ccsbBroad304_13031 pLX_304 0% 26% 25.5% V5 (many diffs) n/a
9 TRCN0000476960 ATACAACTGGAGGGTTGTATTCTC pLX_317 35.7% 26% 25.5% V5 (many diffs) n/a
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