Construct: ORF ccsbBroadEn_15229
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018885.1_s300c1, BRDN0000458181
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- IP6K3 (117283)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 117283 | IP6K3 | inositol hexakisphosphate k... | NM_001142883.1 | 97.4% | 36.9% | (many diffs) |
| 2 | human | 117283 | IP6K3 | inositol hexakisphosphate k... | NM_054111.5 | 97.4% | 36.9% | (many diffs) |
| 3 | human | 117283 | IP6K3 | inositol hexakisphosphate k... | XM_005248842.3 | 97.4% | 36.9% | (many diffs) |
| 4 | human | 117283 | IP6K3 | inositol hexakisphosphate k... | XM_024446323.1 | 97.4% | 36.9% | (many diffs) |
| 5 | human | 117283 | IP6K3 | inositol hexakisphosphate k... | XM_024446324.1 | 97.4% | 36.9% | (many diffs) |
| 6 | human | 117283 | IP6K3 | inositol hexakisphosphate k... | XM_024446325.1 | 97.4% | 36.9% | (many diffs) |
| 7 | human | 117283 | IP6K3 | inositol hexakisphosphate k... | XM_005248843.4 | 66.7% | 4.4% | (many diffs) |
| 8 | human | 117283 | IP6K3 | inositol hexakisphosphate k... | XM_024446326.1 | 66.7% | 4.4% | (many diffs) |
| 9 | human | 117283 | IP6K3 | inositol hexakisphosphate k... | XM_024446327.1 | 66.7% | 4.4% | (many diffs) |
| 10 | human | 117283 | IP6K3 | inositol hexakisphosphate k... | XM_011514295.3 | 61.6% | 56.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 92
- ORF end:
- 641
- ORF length:
- 549
- Sequence:
-
1 TTTATTTTGA CTGATAGTGA CCTGTTCGTT GCAACAAATT GATGAGCAAT GCTTTTTTAT 61 AATGCCAACT TTGTACAAAA AAGTTGGCAC CATGGTTGTG CAAAACAGCG CAGACGCCGG 121 GGACATGAGG GCAGGCGTGC AGCTGGAGCC CTTCCTGCAC CAGGTCGGGG GGCACATGAG 181 CGTGATGAAG TATGACGAGC ATACGGTGTG CAAGCCCCTC GTCTCCCGGG AGCAGAGGTT 241 CTATGAATCC CTGCCGCTGG CCATGAAGCG GTTCACCCCA CAGTACAAAG GTACCGTCAC 301 AGTGCACCTC TGGAAAGACA GCACAGGCCA TCTCAGCTTG GTTGCCAACC CAGTGAAGGA 361 GAGCCAGGAG CCCTTCAAGG TCTCCACAGA GTCGGCGGCG GTGGCCATAT GGCAGACGCT 421 CCAGCAGACC ACCGGCAGCA ATGGCAGCGA CTGCACCCTT GCCCAGTGGC CGCATGCCCA 481 GCTGGCACGC TCACCCAAGG AGAGCCCGGC CAAGGCTCTT CTGAGGTCCG AGCCCCACCT 541 NANCANTCCC ANCCTTNTCG NTGGTNGAAG GACACCAACG GAAACCAGGT TGAGAGGAAG 601 AGCTTNAACC CGTGGGNCNN NNAATGCCAC CAGNCCCACN TGACCCCGCC TGTGCTCNNA 661 GTACCCANAG AACAAGCGGG CATCGGTTCT TGTTGCTGGA AAATGTAGTG TCACAGTACA 721 CGCATNCCTG TGTCCTGGAT CTGAAGATGG GGACCCGGCA GCACGGCGAT GATGCATCGG 781 AGGAGAAGAA GGCCCGCCAC ATGAGGAAGT GTGCGCAGAG CACCTCAGCC TGCCTGGGTG 841 TGCGCATCTG CGGCATGCAG GTTTATCAAA CAGATAAGNA GTACTTTCTN NNNNAAGACA 901 AGTACTATGG NAGAAAACTC TCAGTGGAGG GGTTCAGACA AGCCCTCTAT CAGTTCCTAC 961 ATAATGGAAG CCACCTCCGG AGGGAGCTCC TGGAGCCCAT CCTGCACCAG CTCCGGGCCC 1021 TCCTCTCCAT CATTAGGAGC CAGAGTTCAT ACCGCTTCTA TTCCAGCTCT CTCCTTGTCA 1081 TCTATGATGG GCAGGAACCA CCAGAAAGAG CCCCAGGCAG CCCGCATCCT CACGAGGCTC 1141 CCCAGGCAGC CCACGGTAGC TCTCCCGGTG GTCTCACCAA GGTTGACATC CGCATGATTG 1201 ACTTTGCTCA TACCACATAC AAGGGCTACT GGAATGAGCA CACCACCTAC GATGGACCAG 1261 ACCCTGGCTA TATTTTTGGC CTGGAAAACC TCATCAGGAT CCTGCAGGAT ATCCAAGAGG 1321 GAGAATTGCC AACTTTCTTG TACAAAGTTG GCATTATAAG AAAGCATTGC TTATCAATTT 1381 GTTGCAACGA ACAGGTCACT ATCAGTCAAA ATAAAATCAT TATTGCCATC CAAGCTGATT 1441 CCCCCC