Construct: ORF ccsbBroadEn_15241
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018822.1_s300c1, BRDN0000458118
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CIB4 (130106)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 130106 | CIB4 | calcium and integrin bindin... | NM_001029881.3 | 100% | 100% | |
| 2 | human | 130106 | CIB4 | calcium and integrin bindin... | XM_011532514.2 | 89.5% | 81% | 0_1insATGGGGCA;44_99del |
| 3 | human | 130106 | CIB4 | calcium and integrin bindin... | XM_017003329.1 | 87% | 84.3% | (many diffs) |
| 4 | human | 130106 | CIB4 | calcium and integrin bindin... | XM_017003330.2 | 73.1% | 68.6% | (many diffs) |
| 5 | human | 130106 | CIB4 | calcium and integrin bindin... | XM_017003331.1 | 38.9% | 22.2% | (many diffs) |
| 6 | mouse | 73259 | Cib4 | calcium and integrin bindin... | NM_028483.1 | 87.7% | 91.8% | (many diffs) |
| 7 | mouse | 73259 | Cib4 | calcium and integrin bindin... | XM_006504153.2 | 63.4% | 65.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 228
- ORF end:
- 783
- ORF length:
- 555
- Sequence:
-
1 NNNANNNTAN NNTNANNNNN NNNNNNNNTA CATATTTCTA TGATTATATT TTTGTATATA 61 AGGTTCCAGG TAAACTTCCC AGTCCCCGGC GTGTAACTCG ACTGTCTAGT CTTAAGCTCG 121 GGCCCCAAAT AATGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG 181 AGCAATGCTT TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCACCATG GGGCAATGCT 241 TGAGGTATCA GATGCACTGG GAGGACCTGG AAGAGTACCA GGCCCTGACC TTCCTGACCA 301 GAAATGAAAT TCTGTGCATC CATGACACCT TCCTGAAGCT CTGCCCTCCT GGGAAGTACT 361 ACAAGGAGGC AACGCTCACC ATGGACCAGG TCAGCTCCCT GCCAGCTCTG CGGGTCAACC 421 CTTTCAGAGA CCGTATCTGC AGAGTGTTCT CCCACAAAGG CATGTTCTCC TTTGAGGATG 481 TGCTGGGCAT GGCATCTGTG TTCAGCGAGC AGGCCTGCCC AAGCCTGAAG ATTGAGTATG 541 CCTTTCGCAT CTATGATTTT AATGAGAATG GCTTCATTGA TGAGGAGGAT CTGCAGAGGA 601 TCATCCTGCG ACTGCTGAAC AGTGATGACA TGTCTGAGGA CCTCCTGATG GACCTCACGA 661 ACCACGTCCT GAGTGAGTCG GATCTGGACA ATGACAACAT GCTGTCCTTC TCAGAGTTTG 721 AACATGCAAT GGCCAAGTCT CCAGATTTCA TGAACTCCTT TCGGATTCAC TTCTGGGGAT 781 GCTTGCCAAC TTTCTTGTAC AAAGTTGGCA TTATAAGAAA GCATTGCTTA TCAATTTGTT 841 GCAACGAACA GGTCACTATC AGTCAAAATA AAATCATTAT TNNCNNNCNN NNNNNNNNNC 901 CCTATAGTGG AGTCGTATAC AATGGTCATA GCTGTTTCTG GCAGCTCTGG CCGTGTCCTC 961 TTTGTGTGCG TGTGTGTGTG CGTGCTCCCT CGGGTTTGTC AATATTTCGC GCATCAAGAA 1021 CTCGATAGCT GTGGAAACCG ATGTT