Construct: ORF ccsbBroadEn_15256
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000620.1_s300c1, BRDN0000398442
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF578 (147660)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 147660 | ZNF578 | zinc finger protein 578 | NM_001099694.2 | 61.4% | 60.8% | (many diffs) |
| 2 | human | 147660 | ZNF578 | zinc finger protein 578 | NM_001366182.1 | 61.4% | 60.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1164
- ORF length:
- 1095
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAGAGAAAAA TCTTTCCAAT GTAATGAGAC TGGCAAAGCC TTTAATTGTA 121 GCTCATTTGT AAGGAAACAT CAGATAATCC ATTTAGGAGA AAAACAATAT AAATTTGATA 181 TATGTGGCAA AGTCTTTAAT GAGAAGCGAT ACCTTGCACG CCATCGTAGA TGTCACACTA 241 GTGAGAAACC TTACAAGTGT AATGAATGTG GAAAGTCCTT CAGTTACAAG TCATCCCTGA 301 CATGCCATCG TAGATGTCAC ACTGGTGAGA AACCTTACAA GTGTAATGAA TGTGGAAAGT 361 CCTTCAGTTA CAAGTCATCC CTTACATGCC ATCATAGGTG TCACACTGGT GAGAAACCTT 421 ACAAGTGTAA TGAATGTGGA AAGTCCTTCA GTTACAAGTC ATCCCTTAGA TGCCATCGTA 481 GACTTCATAC TGGAATAAAA CCTTACAAGT GTAATGAGTG TGGCAAGATG TTTGGTCAAA 541 ATTCAACCCT TGTAATTCAT AAGGCAATTC ATACTGGAGA GAAACCTTAC AAGTGTAATG 601 AATGTGGCAA GGCTTTTAAT CAACAATCAC ACCTTTCACG TCATCATAGA CTTCATACTG 661 GAGAGAAACC TTACAAGTGT AATGACTGTG GTAAGGCTTT TATTCATCAG TCAAGCCTTG 721 CATGTCATCA TTGNCttcat actggagaga aatcttacaa atgtgaagaa tgtgacaggg 781 ttttcagtca gaaatcaaac cttgagagac acaagataat tcatactgga gagaaacctt 841 acaagtgtaa tgagtgtcac aagaccttca gtcacaggtc atctcttcca tgccatcgta 901 gacttcatag tggtgagaaa ccttacaagt gtaatgaatg tgggaagact tttaatgtac 961 agtcacacct ttcacgtcat catagacttc atactggaga gaaaccttac aaatgtaagg 1021 tttgtgacaa ggctttcatg tgccattctt atctggcaaa ccatactaga attcatagcg 1081 gagagaaacc ttacaagtgt aatgagtgtg gtaaggctca caatcacttg TTTTATTCAT 1141 CAGTCAAGCC TTGCATGTCA TCATTGCCAA CTTTCTTGTA CAAAGTtggc attataagaa 1201 agcattgctt atcaatttgt tgcaacgaac