Construct: ORF ccsbBroadEn_15336

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018802.1_s300c1, BRDN0000458098
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LOC650122 (650122)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1119 CHKA choline kinase alpha XM_017017148.2 86.9% 84.6% (many diffs)
2 human 1119 CHKA choline kinase alpha NM_212469.1 71% 69.4% (many diffs)
3 human 1119 CHKA choline kinase alpha NM_001277.3 68.3% 66.7% (many diffs)
4 human 1119 CHKA choline kinase alpha XM_017017147.1 64.9% 60.9% (many diffs)
5 human 1119 CHKA choline kinase alpha XR_428904.3 47.2% (many diffs)
6 human 1119 CHKA choline kinase alpha XR_949772.2 32.6% (many diffs)
7 human 1119 CHKA choline kinase alpha XR_949773.2 29.7% (many diffs)
8 human 1119 CHKA choline kinase alpha XR_428905.3 10.8% (many diffs)
9 mouse 12660 Chka choline kinase alpha XM_006531648.2 75.2% 74.6% (many diffs)
10 mouse 12660 Chka choline kinase alpha XM_006531649.2 75.2% 74.6% (many diffs)
11 mouse 12660 Chka choline kinase alpha XM_006531650.2 75.2% 74.6% (many diffs)
12 mouse 12660 Chka choline kinase alpha XM_006531651.3 75.2% 74.6% (many diffs)
13 mouse 12660 Chka choline kinase alpha XM_011248599.2 75.2% 74.6% (many diffs)
14 mouse 12660 Chka choline kinase alpha XM_011248600.2 75.2% 74.6% (many diffs)
15 mouse 12660 Chka choline kinase alpha XM_017318048.1 75.2% 74.6% (many diffs)
16 mouse 12660 Chka choline kinase alpha XM_017318049.1 75.2% 74.6% (many diffs)
17 mouse 12660 Chka choline kinase alpha XM_017318050.1 75.2% 74.6% (many diffs)
18 mouse 12660 Chka choline kinase alpha NM_013490.4 62% 61.6% (many diffs)
19 mouse 12660 Chka choline kinase alpha NM_001271496.1 59.6% 59.2% (many diffs)
20 mouse 12660 Chka choline kinase alpha XM_006531646.1 58.3% 57.9% (many diffs)
21 mouse 12660 Chka choline kinase alpha XR_388248.2 35.4% (many diffs)
22 mouse 12660 Chka choline kinase alpha NR_073190.1 30.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
96
ORF end:
1056
ORF length:
960
Sequence:
1GGTTTTATTT TGACTGGATA GTGACCTGTT CGTTGCAACA AATTGATGAG CAATGCTTTT
61TTATAATGCC AACTTTGTAC AAAAAAGTTG GCACCATGCT GTTCCAGTGC TCCCTACCTG
121ACACCACAGC CACCCTTGGT GATGAGCCTC GGAAAGTGCT CCTGCGGCTG TATGGAGCGA
181TTTTGCAGAT GGGGGCTGAG GCCATGGTTC TGGAGAGCGT TATGTTTGCC ATTCTCGCAG
241AGAGGTCACT TGGGCCAAAA CTCTATGGCA TCTTTCCCCA AGGCCGACTG GAGCAGTTCA
301TCCCGAGCCG GCGATTAGAT ACTGAAGAAT TAAGTTTGCC AGATATTTCT GCAGAAATCG
361CCGAGAAAAT GGCTACATTT CATGGTATGA AAATGCCATT CAATAAGGAA CCAAAATGGC
421TTTTTGGCAC AATGGAAAAG TATCTAAAGG AAGTGCTGAG AATTAAATTT ACTGAGGAAT
481CCAGAATTAA AAAGCTCCAC AAATTGCTCA GTTACAATCT GCCCTTGGAA CTGGAAAACC
541TGAGATCATT GCTTGAATCT ACTCCATCTC CAGTTGTATT TTGTCATAAT GACTGTCAAG
601AAGGTAATAT CTTGTTGCTG GAAGGCCGAG AGAATTCTGA AAAACAGAAA CTGATGCTCA
661TTGATTTCGA ATACAGCAGT TACAATTACA GGGGATTCGA CATTGGAAAT CACTTCTGTG
721AGTGGATGTA TGATTATAGC TATGAAAAAT ACCCTTTTTT CAGAGCAANN NNCCGGAAGT
781ATCCCACCAA GAAACAACAG CTCCATTTTA TTTCCAGTTA CTTGCCTGCA TTCCAAAATG
841ACTTTGAAAA CCTCAGTACT GAAGAAAAAT CCATTATAAA AGAAGAAATG TTGCTTGAAG
901TTAATAGGTT TGCCCTTGCA TCTCATTTCC TCTGGGGACT GTGGTCCATT GTACAAGCCA
961AGATTTCATC TATTGAATTT GGGTACATGN NCNACGCCCA AGCAAGGTTT GATGCCTATT
1021TCCAGTTACT TGCCNGNAGA GGAAGCTTGG GGTGTTNCNA ANTNNCTTNN ANAANNTNNG
1081TACTGAAGAA AAATCCATTA TAAGAAAGNA GAAATGTTGC TTNTCAATTT GTTGCAACGA
1141ACAGGTCACT ATCAGTCAAA ATAAAATCAT TATTGCCATC CAGCTGATTC CCA

Download FASTA (ORF) (Full)

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