Construct: ORF ccsbBroadEn_15340
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018793.1_s300c1, BRDN0000458089
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LOC653155 (653155)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8899 | PRPF4B | pre-mRNA processing factor 4B | NM_003913.5 | 10.4% | 10.5% | 1_2703del;3000C>T |
| 2 | human | 8899 | PRPF4B | pre-mRNA processing factor 4B | XM_017011410.2 | 10.4% | 10.5% | 1_2703del;3000C>T |
| 3 | human | 8899 | PRPF4B | pre-mRNA processing factor 4B | XM_017011411.2 | 10.4% | 10.5% | 1_2703del;3000C>T |
| 4 | human | 8899 | PRPF4B | pre-mRNA processing factor 4B | XM_017011413.2 | 10.4% | 10.5% | 1_2703del;3000C>T |
| 5 | human | 8899 | PRPF4B | pre-mRNA processing factor 4B | XM_017011414.2 | 10.4% | 10.5% | 1_2703del;3000C>T |
| 6 | human | 8899 | PRPF4B | pre-mRNA processing factor 4B | XM_017011415.2 | 10.4% | 10.5% | 1_2703del;3000C>T |
| 7 | human | 8899 | PRPF4B | pre-mRNA processing factor 4B | XM_017011416.2 | 10.4% | 10.5% | 1_2703del;3000C>T |
| 8 | human | 8899 | PRPF4B | pre-mRNA processing factor 4B | XM_017011417.2 | 10.4% | 10.5% | 1_2703del;3000C>T |
| 9 | human | 8899 | PRPF4B | pre-mRNA processing factor 4B | XM_017011418.2 | 10.4% | 10.5% | 1_2703del;3000C>T |
| 10 | human | 8899 | PRPF4B | pre-mRNA processing factor 4B | XM_017011420.2 | 10.4% | 10.5% | 1_2703del;3000C>T |
| 11 | human | 8899 | PRPF4B | pre-mRNA processing factor 4B | XM_017011421.2 | 10.4% | 10.5% | 1_2703del;3000C>T |
| 12 | human | 8899 | PRPF4B | pre-mRNA processing factor 4B | XM_017011422.2 | 10.4% | 10.5% | 1_2703del;3000C>T |
| 13 | human | 8899 | PRPF4B | pre-mRNA processing factor 4B | XM_017011423.2 | 10.4% | 10.5% | 1_2703del;3000C>T |
| 14 | human | 8899 | PRPF4B | pre-mRNA processing factor 4B | XM_017011424.2 | 10.4% | 10.5% | 1_2703del;3000C>T |
| 15 | human | 8899 | PRPF4B | pre-mRNA processing factor 4B | XM_017011425.2 | 10.4% | 10.5% | 1_2703del;3000C>T |
| 16 | human | 8899 | PRPF4B | pre-mRNA processing factor 4B | XM_017011426.2 | 10.4% | 10.5% | 1_2703del;3000C>T |
| 17 | human | 8899 | PRPF4B | pre-mRNA processing factor 4B | XM_017011427.2 | 10.4% | 10.5% | 1_2703del;3000C>T |
| 18 | human | 8899 | PRPF4B | pre-mRNA processing factor 4B | XM_017011428.2 | 10.4% | 10.5% | 1_2703del;3000C>T |
| 19 | human | 8899 | PRPF4B | pre-mRNA processing factor 4B | XM_017011430.2 | 10.4% | 10.5% | 1_2703del;3000C>T |
| 20 | human | 8899 | PRPF4B | pre-mRNA processing factor 4B | NR_146784.2 | 8.8% | 1_2829del;3126C>T;3148_3582del | |
| 21 | human | 8899 | PRPF4B | pre-mRNA processing factor 4B | NR_146783.2 | 8.5% | 1_2829del;3126C>T;3148_3715del | |
| 22 | human | 8899 | PRPF4B | pre-mRNA processing factor 4B | NR_146785.2 | 8.3% | 1_2829del;3126C>T;3148_3792del | |
| 23 | mouse | 19134 | Prpf4b | pre-mRNA processing factor 4B | NM_013830.2 | 9.8% | 10.5% | (many diffs) |
| 24 | mouse | 19134 | Prpf4b | pre-mRNA processing factor 4B | XM_017315425.1 | 9.8% | 10.5% | (many diffs) |
| 25 | mouse | 19134 | Prpf4b | pre-mRNA processing factor 4B | XM_017315426.1 | 9.8% | 10.5% | (many diffs) |
| 26 | mouse | 19134 | Prpf4b | pre-mRNA processing factor 4B | XM_017315427.1 | 9.8% | 10.5% | (many diffs) |
| 27 | mouse | 19134 | Prpf4b | pre-mRNA processing factor 4B | XM_017315428.1 | 9.8% | 10.5% | (many diffs) |
| 28 | mouse | 19134 | Prpf4b | pre-mRNA processing factor 4B | XM_017315429.1 | 9.8% | 10.5% | (many diffs) |
| 29 | mouse | 19134 | Prpf4b | pre-mRNA processing factor 4B | XM_017315430.1 | 9.8% | 10.5% | (many diffs) |
| 30 | mouse | 19134 | Prpf4b | pre-mRNA processing factor 4B | XM_017315431.1 | 9.8% | 10.5% | (many diffs) |
| 31 | mouse | 19134 | Prpf4b | pre-mRNA processing factor 4B | XM_017315432.1 | 9.8% | 10.5% | (many diffs) |
| 32 | mouse | 19134 | Prpf4b | pre-mRNA processing factor 4B | XM_017315433.1 | 9.8% | 10.5% | (many diffs) |
| 33 | mouse | 19134 | Prpf4b | pre-mRNA processing factor 4B | XM_017315434.1 | 9.8% | 10.5% | (many diffs) |
| 34 | mouse | 19134 | Prpf4b | pre-mRNA processing factor 4B | XM_017315435.1 | 9.8% | 10.5% | (many diffs) |
| 35 | mouse | 19134 | Prpf4b | pre-mRNA processing factor 4B | XM_017315436.1 | 9.8% | 10.5% | (many diffs) |
| 36 | mouse | 19134 | Prpf4b | pre-mRNA processing factor 4B | XM_017315437.1 | 9.8% | 10.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 466
- ORF end:
- 784
- ORF length:
- 318
- Sequence:
-
1 NNNNNNTNNN NTNNGNNNGN NNGTGNNNNT GATGGGTGGG ATTGCGGAGA CGCTGGCACC 61 ACCTATAAAA AAAAAAAAAA GTAAGACTAG CATATTTCAC AGAGACGTGG ATGACGTCGA 121 TCGAGAGATC AAGACATTTG ACAGGTTTGA TTTATTGGAA GCTAAGCTTA TTAGTGAACC 181 ACATGAAGTA ATTTAGTCTA ACGATTAAAC AAGTCACACC TCAACGAATT AATTTTTGTT 241 TTCTTAAGTA CATGAACAAT GTTTAATGCC CTCTCATTTT TTTTTTTTTT TATTGTCTAC 301 TTCTTTTTAT TTTTCCCAGT CACAGATGTT GTAAACACGA CGGCCAGTAT TAAGGCTGGG 361 CCCCAAATAA TGATTTTATT TTGACTGATA GTGACCTGTT CGTTGCAACA AATTGATGAG 421 CAATGCTTTT TTATAATGCC AACTTTGTAC AAAAAAGTTG GCACCATGGA TCTCAAAGGA 481 AAGATGCCAA ATAAGATGAT TCGAAAAGGT GTGTTCAAAG ATCAGCATTT TGATCAAAAT 541 CTCAACTTCA TGTACATAGA AGTTGATAAA GTAACAGAGA GGGAGAAAGT TACTGTTATG 601 AGCACCATTA ATCCAACTAA GGACCTGTTG GCTGACTTGA TTGGGTGCCA GAGACTTCCT 661 GAAGACCAAC GTAAGAAAGT ACACCAGCTA AAGGACTTGT TGGACCAGAT TCTGATGTTG 721 GACCCAGCTA AACGAATTAG CATCAACCAG GCCCTACAGC ATGCCTTCAT CCAGGAAAAA 781 ATTTTGCCAA CTTTCTTGTA CAAAGTTGGC ATTATAAGAA AGCATTGCTT ATCAATTTGT 841 TGCAACGAAC AGGTCACTAT CAGTCAAAAT AAAATCATTA TTNNNNNNCN NNNNNNTNNN 901 NCCTATAGTG AGTCGTATTA CATGGTCATA GCTGTTTCCT GGCAGCTCTG GCCCGTGTCT 961 CAAAATCTCA GAATGTTACA CTGCCCAGAA ATGTACCGGG CTCAGTAATA TAACCCTGAA 1021 GTCCCTACAG AAAATAAGCT GTCTCTGAGC ACGCACAAAA GACGATCAAG AATCCGCCCC 1081 GCATTCTACC CCCTATTCTA TGACAGGCTC AACGGAACAG GCCCAAAAGC ATATCATCCC 1141 TCCCTTCTTT GCGTATGGAG CGAATTCGCT AGAGCTCAGT ATCTTTGGTG ATAGGTACGG 1201 GTGCTGTCGA GCAATCCAGC CTACCGTGCC TACTGCTTAA CTCCTGCCTT AGTAAATATT 1261 ATATATTTGT GCAATTTTTT CGACAA