Construct: ORF ccsbBroadEn_15374

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017244.1_s300c1, BRDN0000393584
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CAPNS1 (826)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 826 CAPNS1 calpain small subunit 1 NM_001003962.3 100% 100%
2 human 826 CAPNS1 calpain small subunit 1 NM_001302632.2 100% 100%
3 human 826 CAPNS1 calpain small subunit 1 NM_001749.4 100% 100%
4 human 826 CAPNS1 calpain small subunit 1 XM_005259295.1 82.4% 80.4% (many diffs)
5 human 826 CAPNS1 calpain small subunit 1 XM_005259296.1 82.4% 80.4% (many diffs)
6 human 826 CAPNS1 calpain small subunit 1 XM_024451732.1 75.4% 74.6% (many diffs)
7 human 826 CAPNS1 calpain small subunit 1 XM_011527359.1 74.3% 73.8% 0_1ins204;3_4delGGinsCA
8 human 826 CAPNS1 calpain small subunit 1 NM_001302633.2 58.2% 58.2% 0_1ins336
9 mouse 12336 Capns1 calpain, small subunit 1 NM_009795.4 88.2% 94.7% (many diffs)
10 mouse 12336 Capns1 calpain, small subunit 1 XM_006539488.2 88.2% 94.7% (many diffs)
11 mouse 12336 Capns1 calpain, small subunit 1 XM_011250419.2 68.2% 69.3% (many diffs)
12 mouse 12336 Capns1 calpain, small subunit 1 XM_011250420.1 52.4% 55.5% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
870
ORF length:
804
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgtt cctggttaac tcgttcttga agggcggcgg cggcggcggc gggggaggcg
121ggggcctggg tgggggcctg ggaaatgtgc ttggaggcct gatcagcggg gccgggggcg
181gcggcggcgg cggcggcggc ggcggcggtg gtggaggcgg cggtggcggt ggaacggcca
241tgcgcatcct aggcggagtc atcagcgcca tcagcgaggc ggctgcgcag tacaacccgg
301agcccccgcc cccacgcaca cattactcca acattgaggc caacgagagt gaggaggtcc
361ggcagttccg gagactcttt gcccagctgg ctggagatga catggaggtc agcgccacag
421aactcatgaa cattctcaat aaggttgtga cacgacaccc tgatctgaag actgatggtt
481ttggcattga cacatgtcgc agcatggtgg ccgtgatgga tagcgacacc acaggcaagc
541tgggctttga ggaattcaag tacttgtgga acaacatcaa aaggtggcag gccatataca
601aacagttcga cactgaccga tcagggacca tttgcagtag tgaactccca ggtgcctttg
661aggcagcagg gttccacctg aatgagcatc tctataacat gatcatccga cgctactcag
721atgaaagtgg gaacatggat tttgacaact tcatcagctg cttggtcagg ctggacgcca
781tgttccgtgc cttcaaatct cttgacaaag atggcactgg acaaatccag gtgaacatcc
841aggagtggct gcagctgact atgtattcct nnccaacttt cttgtacaaa gttggcatta
901taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)