Construct: ORF ccsbBroadEn_15459

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013406.1_s300c1, BRDN0000392653
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ICA1 (3382)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3382 ICA1 islet cell autoantigen 1 NM_001350838.2 65.7% 54.4% (many diffs)
2 human 3382 ICA1 islet cell autoantigen 1 NM_001350831.2 65.2% 60.2% (many diffs)
3 human 3382 ICA1 islet cell autoantigen 1 NM_001350832.2 65.2% 60.2% (many diffs)
4 human 3382 ICA1 islet cell autoantigen 1 NM_001350833.2 65.2% 60.2% (many diffs)
5 human 3382 ICA1 islet cell autoantigen 1 NM_001350834.2 65% 60% (many diffs)
6 human 3382 ICA1 islet cell autoantigen 1 NM_001350830.2 63.2% 54% (many diffs)
7 human 3382 ICA1 islet cell autoantigen 1 NM_001136020.3 62.8% 57.2% (many diffs)
8 human 3382 ICA1 islet cell autoantigen 1 NM_001350819.2 62.8% 57.2% (many diffs)
9 human 3382 ICA1 islet cell autoantigen 1 NM_001350820.2 62.8% 57.2% (many diffs)
10 human 3382 ICA1 islet cell autoantigen 1 NM_004968.3 62.8% 57.2% (many diffs)
11 human 3382 ICA1 islet cell autoantigen 1 NM_022307.3 62.8% 57.2% (many diffs)
12 human 3382 ICA1 islet cell autoantigen 1 NM_001276478.2 62.6% 56.9% (many diffs)
13 human 3382 ICA1 islet cell autoantigen 1 NM_001350821.2 62.6% 56.9% (many diffs)
14 human 3382 ICA1 islet cell autoantigen 1 NM_001350823.2 62.6% 56.9% (many diffs)
15 human 3382 ICA1 islet cell autoantigen 1 NM_001350824.2 62.6% 56.9% (many diffs)
16 human 3382 ICA1 islet cell autoantigen 1 NM_001350825.2 62.6% 56.9% (many diffs)
17 human 3382 ICA1 islet cell autoantigen 1 XR_002956427.1 61.5% 1_160del;866_962del;1045_1046ins235
18 human 3382 ICA1 islet cell autoantigen 1 NM_001350826.2 60% 52.1% (many diffs)
19 human 3382 ICA1 islet cell autoantigen 1 NM_001350827.2 60% 52.1% (many diffs)
20 human 3382 ICA1 islet cell autoantigen 1 XM_011515347.3 60% 52.1% (many diffs)
21 human 3382 ICA1 islet cell autoantigen 1 XM_011515348.1 60% 52.1% (many diffs)
22 human 3382 ICA1 islet cell autoantigen 1 XM_011515349.1 60% 52.1% (many diffs)
23 human 3382 ICA1 islet cell autoantigen 1 NM_001350828.2 59.8% 51.9% (many diffs)
24 human 3382 ICA1 islet cell autoantigen 1 NM_001350829.2 59.8% 51.9% (many diffs)
25 human 3382 ICA1 islet cell autoantigen 1 XM_011515351.1 59.8% 51.9% (many diffs)
26 human 3382 ICA1 islet cell autoantigen 1 XM_011515353.2 59.8% 51.9% (many diffs)
27 human 3382 ICA1 islet cell autoantigen 1 XM_017012116.1 59.8% 51.9% (many diffs)
28 human 3382 ICA1 islet cell autoantigen 1 XM_024446741.1 59.8% 51.9% (many diffs)
29 human 3382 ICA1 islet cell autoantigen 1 XM_024446740.1 54.2% 47.1% (many diffs)
30 human 3382 ICA1 islet cell autoantigen 1 XR_002956426.1 51.8% (many diffs)
31 human 3382 ICA1 islet cell autoantigen 1 NM_001350835.2 47.4% 39.9% (many diffs)
32 human 3382 ICA1 islet cell autoantigen 1 NM_001350836.2 47.4% 39.9% (many diffs)
33 human 3382 ICA1 islet cell autoantigen 1 NM_001350837.2 47.4% 39.9% (many diffs)
34 human 3382 ICA1 islet cell autoantigen 1 XM_017012125.1 47.4% 39.9% (many diffs)
35 human 3382 ICA1 islet cell autoantigen 1 XM_011515354.1 45.5% 36.4% (many diffs)
36 human 3382 ICA1 islet cell autoantigen 1 NR_146927.2 42% (many diffs)
37 human 3382 ICA1 islet cell autoantigen 1 NR_146929.2 38.6% (many diffs)
38 human 3382 ICA1 islet cell autoantigen 1 NR_146926.2 38.5% (many diffs)
39 human 3382 ICA1 islet cell autoantigen 1 NR_146928.2 37.5% (many diffs)
40 mouse 15893 Ica1 islet cell autoantigen 1 NM_001252266.1 62.4% 56.3% (many diffs)
41 mouse 15893 Ica1 islet cell autoantigen 1 XM_006504995.3 62.4% 56.3% (many diffs)
42 mouse 15893 Ica1 islet cell autoantigen 1 NM_010492.3 60.5% 54% (many diffs)
43 mouse 15893 Ica1 islet cell autoantigen 1 XM_006504993.3 60.5% 54% (many diffs)
44 mouse 15893 Ica1 islet cell autoantigen 1 XM_006504994.3 60.5% 54% (many diffs)
45 mouse 15893 Ica1 islet cell autoantigen 1 XR_001785099.1 30% (many diffs)
46 mouse 15893 Ica1 islet cell autoantigen 1 XR_001785098.1 29.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1089
ORF length:
1023
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgtc aggacacaaa tgcagttatc cctgggactt acaggatcga tatgctcaag
121ataagtcagt tgtaaataag atgcaacaga aatattggga gacgaagcag gcctttatta
181aagccacagg gaagaaggaa gatgaacatg ttgttgcctc tgacgcggac ctggatgcca
241agctagagct gtttcattca attcagagaa cctgtctgga cttatcgaaa gcaattgtac
301tctatcaaaa gaggatatgt ttcttgtctc aagaagaaaa cgaactggga aaatttcttc
361gatcccaagg tttccaagat aaaaccagag caggaaagat gatgcaagcg acaggaaagg
421ccctctgctt ttcttcccag caaaggttgg ccttacgaaa tcctttgtgt cgatttcacc
481aagaagtgga gacttttcgg catcgggcca tctcagatac ttggctgacg gtgaaccgca
541tggaacagtg caggacggaa tatagaggag cactattatg gatgaaggac gtgtctcagg
601agcttgatcc agacctctac aagcaaatgg agaagttcag gaaggtacaa acacaagtgc
661gccttgcaaa aaaaaacttt gacaaattga agatggatgt ttgtcaaaaa gtggatcttc
721ttggagcgag cagatgcaat ctcttgtctc acatgctagc aacataccag accactctgc
781ttcatttttg ggagaaaact tctcacacta tggcagccat ccatgagagt ttcaaaggtt
841atcaaccata tgaatttact actttaaagg tatggaagct agaggggcca ctagaaaatc
901ttgagaaaag taaagttttg tttatatcac aagcaaagtc cattgcagaa agcatcatta
961ttccaggact cagaatgctg aagagagaac tgtgccccca gcagagtctt tttctttctt
1021tctttctttt tttttactgc atcaggattc aatacaatga gaatctactg caatccaaaa
1081gcgcgaattn nccaactttc ttgtacaaag ttggcattat aagaaagcat tgcttatcaa
1141tttgttgcaa cgaac

Download FASTA (ORF) (Full)