Construct: ORF ccsbBroadEn_15481
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004241.1_s300c1, BRDN0000395037
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- INPP5D (3635)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3635 | INPP5D | inositol polyphosphate-5-ph... | NM_005541.5 | 99.9% | 100% | 816G>A |
| 2 | human | 3635 | INPP5D | inositol polyphosphate-5-ph... | NM_001017915.3 | 99.8% | 99.9% | 348_350delAGT;819G>A |
| 3 | human | 3635 | INPP5D | inositol polyphosphate-5-ph... | XM_017004004.1 | 55.6% | 55.6% | 0_1ins1581 |
| 4 | mouse | 16331 | Inpp5d | inositol polyphosphate-5-ph... | NM_001110192.2 | 84.3% | 87.2% | (many diffs) |
| 5 | mouse | 16331 | Inpp5d | inositol polyphosphate-5-ph... | NM_010566.3 | 84.2% | 87.1% | (many diffs) |
| 6 | mouse | 16331 | Inpp5d | inositol polyphosphate-5-ph... | XM_006529150.2 | 83.9% | 86.8% | (many diffs) |
| 7 | mouse | 16331 | Inpp5d | inositol polyphosphate-5-ph... | XM_006529149.2 | 83.9% | 86.7% | (many diffs) |
| 8 | mouse | 16331 | Inpp5d | inositol polyphosphate-5-ph... | NM_001110193.2 | 80.4% | 83.1% | (many diffs) |
| 9 | mouse | 16331 | Inpp5d | inositol polyphosphate-5-ph... | XM_006529151.2 | 80.1% | 82.7% | (many diffs) |
| 10 | mouse | 16331 | Inpp5d | inositol polyphosphate-5-ph... | XM_006529152.2 | 68.1% | 69.4% | (many diffs) |
| 11 | mouse | 16331 | Inpp5d | inositol polyphosphate-5-ph... | NR_122078.1 | 58.5% | (many diffs) | |
| 12 | mouse | 16331 | Inpp5d | inositol polyphosphate-5-ph... | XR_001782395.1 | 57.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3633
- ORF length:
- 3564
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcaccat ggtcccctgc tggaaccatg gcaacatcac ccgctccaag gcggaggagc 121 tgctttccag gacaggcaag gacgggagct tcctcgtgcg tgccagcgag tccatctccc 181 gggcatacgc gctctgcgtg ctgtatcgga attgcgttta cacttacaga attctgccca 241 atgaagatga taaattcact gttcaggcat ccgaaggcgt ctccatgagg ttcttcacca 301 agctggacca gctcatcgag ttttacaaga aggaaaacat ggggctggtg acccatctgc 361 aataccctgt gccgctggag gaagaggaca caggcgacga ccctgaggag gacacagaaa 421 gtgtcgtgtc tccacccgag ctgcccccaa gaaacatccc gctgactgcc agctcctgtg 481 aggccaagga ggttcctttt tcaaacgaga atccccgagc gaccgagacc agccggccga 541 gcctctccga gacattgttc cagcgactgc aaagcatgga caccagtggg cttccagaag 601 agcatcttaa ggccatccaa gattatttaa gcactcagct cgcccaggac tctgaatttg 661 tgaagacagg gtccagcagt cttcctcacc tgaagaaact gaccacactg ctctgcaagg 721 agctctatgg agaagtcatc cggaccctcc catccctgga gtctctgcag aggttatttg 781 accagcagct ctccccgggc ctccgtccac gtcctcaggt tcctggtgag gccaatccca 841 tcaacatggt gtccaagctc agccaactga caagcctgtt gtcatccatt gaagacaagg 901 tcaaggcctt gctgcacgag ggtcctgagt ctccgcaccg gccctccctt atccctccag 961 tcacctttga ggtgaaggca gagtctctgg ggattcctca gaaaatgcag ctcaaagtcg 1021 acgttgagtc tgggaaactg atcattaaga agtccaagga tggttctgag gacaagttct 1081 acagccacaa gaaaatcctg cagctcatta agtcacagaa atttctgaat aagttggtga 1141 tcttggtgga aacagagaag gagaagatcc tgcggaagga atatgttttt gctgactcca 1201 aaaagagaga aggcttctgc cagctcctgc agcagatgaa gaacaagcac tcagagcagc 1261 cggagcccga catgatcacc atcttcatcg gcacctggaa catgggtaac gccccccctc 1321 ccaagaagat cacgtcctgg tttctctcca aggggcaggg aaagacgcgg gacgactctg 1381 cggactacat cccccatgac atttacgtga tcggcaccca agaggacccc ctgagtgaga 1441 aggagtggct ggagatcctc aaacactccc tgcaagaaat caccagtgtg acttttaaaa 1501 cagtcgccat ccacacgctc tggaacatcc gcatcgtggt gctggccaag cctgagcacg 1561 agaaccggat cagccacatc tgtactgaca acgtgaagac aggcattgca aacacactgg 1621 ggaacaaggg agccgtgggg gtgtcgttca tgttcaatgg aacctcctta gggttcgtca 1681 acagccactt gacttcagga agtgaaaaga aactcaggcg aaaccaaaac tatatgaaca 1741 ttctccggtt cctggccctg ggcgacaaga agctgagtcc ctttaacatc actcaccgct 1801 tcacgcacct cttctggttt ggggatctta actaccgtgt ggatctgcct acctgggagg 1861 cagaaaccat catccagaaa atcaagcagc agcagtacgc agacctcctg tcccacgacc 1921 agctgctcac agagaggagg gagcagaagg tcttcctaca cttcgaggag gaagaaatca 1981 cgtttgcccc aacctaccgt tttgagagac tgactcggga caaatacgcc tacaccaagc 2041 agaaagcgac agggatgaag tacaacttgc cttcctggtg tgaccgagtc ctctggaagt 2101 cttatcccct ggtgcacgtg gtgtgtcagt cttatggcag taccagcgac atcatgacga 2161 gtgaccacag ccctgtcttt gccacatttg aggcaggagt cacttcccag tttgtctcca 2221 agaacggtcc cgggactgtt gacagccaag gacagattga gtttctcagg tgctatgcca 2281 cattgaagac caagtcccag accaaattct acctggagtt ccactcgagc tgcttggaga 2341 gttttgtcaa gagtcaggaa ggagaaaatg aagaaggaag tgagggggag ctggtggtga 2401 agtttggtga gactcttcca aagctgaagc ccattatctc tgaccctgag tacctgctag 2461 accagcacat cctcatcagc atcaagtcct ctgacagcga cgaatcctat ggcgagggct 2521 gcattgccct tcggttagag gccacagaaa cgcagctgcc catctacacg cctctcaccc 2581 accatgggga gttgacaggc cacttccagg gggagatcaa gctgcagacc tctcagggca 2641 agacgaggga gaagctctat gactttgtga agacggagcg tgatgaatcc agtgggccaa 2701 agaccctgaa gagcctcacc agccacgacc ccatgaagca gtgggaagtc actagcaggg 2761 cccctccgtg cagtggctcc agcatcactg aaatcatcaa ccccaactac atgggagtgg 2821 ggccctttgg gccaccaatg cccctgcacg tgaagcagac cttgtcccct gaccagcagc 2881 ccacagcctg gagctacgac cagccgccca aggactcccc gctggggccc tgcaggggag 2941 aaagtcctcc gacacctccc ggccagccgc ccatatcacc caagaagttt ttaccctcaa 3001 cagcaaaccg gggtctccct cccaggacac aggagtcaag gcccagtgac ctggggaaga 3061 acgcagggga cacgctgcct caggaggacc tgccgctgac gaagcccgag atgtttgaga 3121 accccctgta tgggtccctg agttccttcc ctaagcctgc tcccaggaag gaccaggaat 3181 cccccaaaat gccgcggaag gaacccccgc cctgcccgga acccggcatc ttgtcgccca 3241 gcatcgtgct caccaaagcc caggaggctg atcgcggcga ggggcccggc aagcaggtgc 3301 ccgcgccccg gctgcgctcc ttcacgtgct catcctctgc cgagggcagg gcggccggcg 3361 gggacaagag ccaagggaag cccaagaccc cggtcagctc ccaggccccg gtgccggcca 3421 agaggcccat caagccttcc agatcggaaa tcaaccagca gaccccgccc accccgacgc 3481 cgcggccgcc gctgccagtc aagagcccgg cggtgctgca cctccagcac tccaagggcc 3541 gcgactaccg cgacaacacc gagctcccgc atcacggcaa gcaccggccg gaggaggggc 3601 caccagggcc tctaggcagg actgccatgc agtnnccaac tttcttgtac aaagttggca 3661 ttataagaaa gcattgctta tcaatttgtt gcaacgaac