Construct: ORF ccsbBroadEn_15489
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009984.1_s300c1, BRDN0000390809
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- STMN1 (3925)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3925 | STMN1 | stathmin 1 | NM_005563.4 | 100% | 100% | |
| 2 | human | 3925 | STMN1 | stathmin 1 | NM_203399.1 | 100% | 100% | |
| 3 | human | 3925 | STMN1 | stathmin 1 | NM_203401.1 | 100% | 100% | |
| 4 | human | 3925 | STMN1 | stathmin 1 | NM_001145454.3 | 79% | 69.5% | (many diffs) |
| 5 | mouse | 16765 | Stmn1 | stathmin 1 | NM_019641.4 | 89% | 98.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 513
- ORF length:
- 447
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatggc ttcttctgat atccaggtga aagaactgga gaagcgtgcc tcaggccagg 121 cttttgagct gattctcagc cctcggtcaa aagaatctgt tccagaattc cccctttccc 181 ctccaaagaa gaaggatctt tccctggagg aaattcagaa gaaattagaa gctgcagaag 241 aaagacgcaa gtcccatgaa gctgaggtct tgaagcagct ggctgagaaa cgagagcacg 301 agaaagaagt gcttcagaag gcaatagaag agaacaacaa cttcagtaaa atggcagaag 361 agaaactgac ccacaaaatg gaagctaata aagagaaccg agaggcacaa atggctgcca 421 aactggaacg tttgcgagag aaggataagc acattgaaga agtgcggaag aacaaagaat 481 ccaaagaccc tgctgacgag actgaagctg actnnccaac tttcttgtac aaagttggca 541 ttataagaaa gcattgctta tcaatttgtt gcaacgaac