Transcript: Mouse NM_019641.4

Mus musculus stathmin 1 (Stmn1), mRNA.

Source:
NCBI, updated 2017-06-25
Taxon:
Mus musculus (mouse)
Gene:
Stmn1 (16765)
Length:
1070
CDS:
171..620

Additional Resources:

NCBI RefSeq record:
NM_019641.4
NBCI Gene record:
Stmn1 (16765)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_019641.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000374584 CAATCGGTGTGCTGGGTTAAT pLKO_005 866 3UTR 100% 13.200 18.480 N Stmn1 n/a
2 TRCN0000312803 AGCCGATGTAGGACCGTATAG pLKO_005 720 3UTR 100% 10.800 15.120 N Stmn1 n/a
3 TRCN0000071623 CCTAAATATCCAAAGACTGTA pLKO.1 656 3UTR 100% 4.950 3.465 N Stmn1 n/a
4 TRCN0000071625 GCAGAAGAAAGACGCAAGTCT pLKO.1 339 CDS 100% 3.000 2.100 N Stmn1 n/a
5 TRCN0000311863 GCAGAAGAAAGACGCAAGTCT pLKO_005 339 CDS 100% 3.000 2.100 N Stmn1 n/a
6 TRCN0000071626 GAAAGCCATCGAGGAGAACAA pLKO.1 422 CDS 100% 4.950 2.970 N Stmn1 n/a
7 TRCN0000311864 GAAAGCCATCGAGGAGAACAA pLKO_005 422 CDS 100% 4.950 2.970 N Stmn1 n/a
8 TRCN0000312845 GATTCTCAGCCCTCGGTCAAA pLKO_005 236 CDS 100% 4.950 2.970 N Stmn1 n/a
9 TRCN0000374652 AGAAGGACAAGCACGTGGAAG pLKO_005 544 CDS 100% 4.050 2.430 N Stmn1 n/a
10 TRCN0000071627 CCTGGAGGAAATCCAGAAGAA pLKO.1 308 CDS 100% 0.495 0.297 N Stmn1 n/a
11 TRCN0000071624 CGGAAGAACAAAGAATCCAAA pLKO.1 570 CDS 100% 4.950 2.475 Y Stmn1 n/a
12 TRCN0000160524 CGGAAGAACAAAGAATCCAAA pLKO.1 570 CDS 100% 4.950 2.475 Y STMN1 n/a
13 TRCN0000144793 GAACAACAACTTCAGCAAGAT pLKO.1 437 CDS 100% 4.950 2.475 Y STMN2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_019641.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15489 pDONR223 0% 89% 98.6% None (many diffs) n/a
2 ccsbBroad304_15489 pLX_304 0% 89% 98.6% V5 (many diffs) n/a
3 TRCN0000478516 CTAACAAGAAACCCAATCACTGCG pLX_317 81.5% 89% 98.6% V5 (many diffs) n/a
4 ccsbBroadEn_06515 pDONR223 100% 88.8% 97.9% None (many diffs) n/a
5 ccsbBroad304_06515 pLX_304 0% 88.8% 97.9% V5 (many diffs) n/a
6 TRCN0000478946 TTCCCGTGGAGGCCCGTGGGGCAT pLX_317 69.3% 88.8% 97.9% V5 (many diffs) n/a
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