Construct: ORF ccsbBroadEn_15500
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005301.1_s300c1, BRDN0000387169
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MLLT6 (4302)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4302 | MLLT6 | MLLT6, PHD finger containing | NM_005937.4 | 28.4% | 25.4% | (many diffs) |
| 2 | mouse | 246198 | Mllt6 | myeloid/lymphoid or mixed-l... | XM_006533335.2 | 29.5% | 26.8% | (many diffs) |
| 3 | mouse | 246198 | Mllt6 | myeloid/lymphoid or mixed-l... | NM_139311.2 | 26.1% | 24.4% | (many diffs) |
| 4 | mouse | 246198 | Mllt6 | myeloid/lymphoid or mixed-l... | XM_006533332.2 | 26.1% | 23.7% | (many diffs) |
| 5 | mouse | 246198 | Mllt6 | myeloid/lymphoid or mixed-l... | XM_006533333.2 | 26% | 23.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1041
- ORF length:
- 975
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgaa ggagatggta ggaggctgct gcgtatgttc ggacgagagg ggctgggccg 121 agaacccgct ggtctactgc gatgggcacg cgtgcagcgt ggccgtccac caagcttgct 181 atggcatcgt tcaggtgcca acgggaccct ggttctgccg gaaatgtgaa tctcaggagc 241 gagcagccag ggtgaggtgt gagctgtgcc cacacaaaga cggggcattg aagaggactg 301 ataatggagg ctgggcacac gtggtgtgtg ccctctacat ccccgaggtg caatttgcca 361 acgtgctcac catggagccc atcgtgctgc agtacgtgcc tcatgatcgc ttcaacaaga 421 cctgttacat ctgcgaggag cagggccggg agagcaaggc ggcctcggga gcctgcatga 481 cctgtaaccg ccatggatgt cgacaagcct tccacgtcac ctgtgcccaa atggcaggct 541 tgctgtgtga ggaagaagtg ctggaggtgg acaacgtcaa gtactgcggc tactgcaaat 601 accacttcag caagatgaag acatcccggc acagcagcgg gggaggcgga ggaggcgctg 661 gaggaggagg tggcagcatg gggggaggtg gcagtggttt catctctggg aggagaagcc 721 ggtcagcctc accatccacg cagcaggaga agcaccccac ccaccacgag aggggccaga 781 agaagagtcg aaaggacaaa gaacgcctta agcagaagca caagaagcgg cctgagtcgc 841 cccccagcat cctcaccccg cccgtggtcc ccactgctga caagcctaga aggggccacc 901 aatcaccgac caaccatggg attgggagtt tggggtgctg tctgccagat actcccatct 961 gcctctgtcc agagggcctc agccctgggc tcttgtctgc agagagtggg ggacggcact 1021 caggcctgct ctccaagttc tnnccaactt tcttgtacaa agttggcatt ataagaaagc 1081 attgcttatc aatttgttgc aacgaac