Construct: ORF ccsbBroadEn_15509
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009349.1_s300c1, BRDN0000395222
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NOP2 (4839)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4839 | NOP2 | NOP2 nucleolar protein | NM_001033714.3 | 100% | 100% | |
| 2 | human | 4839 | NOP2 | NOP2 nucleolar protein | NM_006170.4 | 100% | 100% | |
| 3 | human | 4839 | NOP2 | NOP2 nucleolar protein | NM_001258308.2 | 99.5% | 99.5% | 237_248del |
| 4 | human | 4839 | NOP2 | NOP2 nucleolar protein | XM_005253691.2 | 99.5% | 99.5% | 237_248del |
| 5 | human | 4839 | NOP2 | NOP2 nucleolar protein | NM_001258309.2 | 95.6% | 95.6% | 237_248del;474_572del |
| 6 | human | 4839 | NOP2 | NOP2 nucleolar protein | NM_001258310.2 | 76% | 72.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2493
- ORF length:
- 2424
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcaccat ggggcgcaag ttggacccta cgaaggagaa gcgggggcca ggccgaaagg 121 cccggaagca gaagggtgcc gagacagaac tcgtcagatt cttgcctgca gtaagtgacg 181 aaaattccaa gaggctgtct agtcgtgctc gaaagagggc agccaagagg agattgggct 241 ctgttgaagc ccctaagaca aataagtctc ctgaggccaa accattgcct ggaaagctac 301 caaaaggagc tgtccagaca gctggtaaga agggacccca gtccctattt aatgctcctc 361 gaggcaagaa gcgcccagca cctggcagtg atgaggaaga ggaggaggaa gactctgaag 421 aagatggtat ggtgaaccac ggggacctct ggggctccga ggacgatgct gatacggtag 481 atgactatgg agctgactcc aactctgagg atgaggagga aggtgaagcg ttgctgccca 541 ttgaaagagc tgctcggaag cagaaggccc gggaagctgc tgctgggatc cagtggagtg 601 aagaggagac cgaggacgag gaggaagaga aagaagtgac ccctgagtca ggccccccaa 661 aggtggaaga ggcagatggg ggcctgcaga tcaatgtgga tgaggaacca tttgtgctgc 721 cccctgctgg ggagatggag caggatgccc aggctccaga cctgcaacga gttcacaagc 781 ggatccagga tattgtggga attctgcgtg attttggggc tcagcgggag gaagggcggt 841 ctcgttctga atacctgaac cggctcaaga aggatctggc catttactac tcctatggag 901 acttcctgct tggcaagctc atggacctct tccctctgtc tgagctggtg gagttcttag 961 aagctaatga ggtgcctcgg cccgtcaccc tccggaccaa taccttgaaa acccgacgcc 1021 gagaccttgc acaggctcta atcaatcgtg gggttaacct ggatcccctg ggcaagtggt 1081 caaagactgg actagtggtg tatgattctt ctgtgcccat tggtgctacc cccgagtacc 1141 tggctgggca ctacatgctg cagggagcct ccagcatgtt gcccgtcatg gccttggcac 1201 cccaggaaca tgagcggatc ctggacatgt gttgtgcccc tggaggaaag accagctaca 1261 tggcccagct gatgaagaac acgggtgtga tccttgccaa tgacgccaat gctgagcggc 1321 tcaagagtgt tgtgggcaac ttgcatcggc tgggagtcac caacaccatt atcagccact 1381 atgatgggcg ccagttcccc aaggtggtgg ggggctttga ccgagtactg ctggatgctc 1441 cctgcagtgg cactggggtc atctccaagg atccagccgt gaagactaac aaggatgaga 1501 aggacatcct gcgctgtgct cacctccaga aggagttgct cctgagtgct attgactctg 1561 tcaatgcgac ctccaagaca ggaggctacc tggtttactg cacctgttct atcacagtag 1621 aagagaatga gtgggtggta gactatgctc tgaaaaagag gaatgtgcga ctggtgccca 1681 cgggcctaga ctttggccag gaaggtttta cccgctttcg agaaaggcgc ttccacccca 1741 gtctgcgttc tacccgacgc ttctaccctc atacccacaa tatggatggg ttcttcattg 1801 ccaagttcaa gaaattttcc aattctatcc ctcagtccca gacaggaaat tctgaaacag 1861 ccacacctac aaatgtagac ttgcctcagg tcatccccaa gtctgagaac agcagccagc 1921 cagccaagaa agccaagggg gctgcaaaga caaagcagca gctgcagaaa cagcaacatc 1981 ccaagaaggc ctccttccag aagctgaatg gcatctccaa aggggcagac tcagaattgt 2041 ccactgtacc ttctgtcaca aagacccaag cttcctccag cttccaggat agcagtcagc 2101 cagctggaaa agccgaaggg atcagggagc caaaggtgac tgggaagcta aagcaacgat 2161 cacctaaatt acagtcctcc aagaaagttg ctttcctcag gcagaatgcc cctcccaagg 2221 gcacagacac acaaacaccg gctgtgttat ccccatccaa gactcaggcc accctgaaac 2281 ctaaggacca tcatcagccc cttggaaggg ccaagggggt tgagaagcag cagttgccag 2341 agcagccttt tgagaaagct gccttccaga aacagaatga tacccccaag gggcctcagc 2401 ctcccactgt gtctcccatc cgttccagcc gccccccacc agcaaagagg aagaaatctc 2461 agtccagggg caacagccag ctgctgctat cttnnccaac tttcttgtac aaagttggca 2521 ttataagaaa gcattgctta tcaatttgtt gcaacgaac