Transcript: Human NM_001258308.2

Homo sapiens NOP2 nucleolar protein (NOP2), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-07-10
Taxon:
Homo sapiens (human)
Gene:
NOP2 (4839)
Length:
2650
CDS:
90..2528

Additional Resources:

NCBI RefSeq record:
NM_001258308.2
NBCI Gene record:
NOP2 (4839)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001258308.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000157484 GACGATGCTGATACGGTAGAT pLKO.1 495 CDS 100% 4.950 6.930 N NOP2 n/a
2 TRCN0000285513 GACGATGCTGATACGGTAGAT pLKO_005 495 CDS 100% 4.950 6.930 N NOP2 n/a
3 TRCN0000153307 GAGTGCTATTGACTCTGTCAA pLKO.1 1577 CDS 100% 4.950 6.930 N NOP2 n/a
4 TRCN0000154296 GCTAAAGCAACGATCACCTAA pLKO.1 2180 CDS 100% 4.950 6.930 N NOP2 n/a
5 TRCN0000157117 GCCGTGAAGACTAACAAGGAT pLKO.1 1509 CDS 100% 3.000 4.200 N NOP2 n/a
6 TRCN0000285510 GAAACAGCCACACCTACAAAT pLKO_005 1887 CDS 100% 13.200 9.240 N NOP2 n/a
7 TRCN0000285509 ATGAGTGGGTGGTAGACTATG pLKO_005 1660 CDS 100% 10.800 7.560 N NOP2 n/a
8 TRCN0000153019 GCCTTCCAGAAACAGAATGAT pLKO.1 2394 CDS 100% 5.625 3.938 N NOP2 n/a
9 TRCN0000276269 GCCTTCCAGAAACAGAATGAT pLKO_005 2394 CDS 100% 5.625 3.938 N NOP2 n/a
10 TRCN0000152472 CACTGTACCTTCTGTCACAAA pLKO.1 2075 CDS 100% 4.950 3.465 N NOP2 n/a
11 TRCN0000276268 CACTGTACCTTCTGTCACAAA pLKO_005 2075 CDS 100% 4.950 3.465 N NOP2 n/a
12 TRCN0000157241 CCACTGTACCTTCTGTCACAA pLKO.1 2074 CDS 100% 4.950 3.465 N NOP2 n/a
13 TRCN0000157909 CGAGACAGAACTCGTCAGATT pLKO.1 161 CDS 100% 4.950 3.465 N NOP2 n/a
14 TRCN0000152792 GCCATTTACTACTCCTATGGA pLKO.1 912 CDS 100% 3.000 2.100 N NOP2 n/a
15 TRCN0000151506 CCTAAGACAAATAAGTCTCCT pLKO.1 273 CDS 100% 2.640 1.848 N NOP2 n/a
16 TRCN0000152560 GTCCTCCAAGAAAGTTGCTTT pLKO.1 2207 CDS 100% 4.950 2.970 N NOP2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001258308.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15509 pDONR223 0% 99.5% 99.5% None 237_248del n/a
2 ccsbBroad304_15509 pLX_304 0% 99.5% 99.5% V5 237_248del n/a
3 TRCN0000474625 TGCTCAACTGTCATAATATGTCTT pLX_317 12.5% 99.5% 99.5% V5 237_248del n/a
4 ccsbBroadEn_10999 pDONR223 100% 96% 96% None 473_474ins99 n/a
5 ccsbBroad304_10999 pLX_304 0% 96% 96% V5 473_474ins99 n/a
6 TRCN0000476171 AGTTTGAAAGAATACATCCCAGTA pLX_317 13.2% 96% 96% V5 473_474ins99 n/a
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