Construct: ORF ccsbBroadEn_15547

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004458.1_s300c1, BRDN0000390701
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PSMC1 (5700)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5700 PSMC1 proteasome 26S subunit, ATP... NM_002802.3 99.7% 99.7% 209A>G;345C>T;1092C>A
2 human 5700 PSMC1 proteasome 26S subunit, ATP... NM_001330212.1 83.2% 83.4% 0_1ins219;126C>T;873C>A
3 human 5700 PSMC1 proteasome 26S subunit, ATP... XM_017021470.1 83.2% 83.4% 0_1ins219;126C>T;873C>A
4 mouse 19179 Psmc1 protease (prosome, macropai... NM_008947.3 91.5% 99.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1386
ORF length:
1320
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatggg tcaaagtcag agtggtggtc atggtcctgg aggtggcaag aaggatgaca
121aggacaagaa aaagaaatat gaacctcctg taccaactag agtggggaaa aagaagaaga
181aaacaaaggg accagatgct gccagcaaac tgccactggt gacacctcac actcagtgcc
241ggttaaaatt actgaagtta gagagaatta aaggctatct tctcatggag gaagaattca
301ttagaaatca ggaacaaatg aaaccattag aagaaaagca agaggaggaa agatcaaaag
361tggatgatct gagggggacc ccgatgtcag taggaacctt ggaagagatt attgatgaca
421atcatgccat cgtgtctaca tctgtgggct cagaacacta cgtcagcatt ctttcatttg
481tagacaagga tctgctggaa cctggctgct cggtcctgct caaccacaag gtgcatgccg
541tgataggggt gctgatggat gacacggatc ccctggtcac agtgatgaag gtagaaaagg
601ccccccagga gacctatgca gatattgggg ggttggacaa ccaaattcag gaaattaagg
661aatctgtgga gcttcctctc acccatcctg aatattatga agagatgggt ataaagcctc
721ctaagggggt cattctctat ggtccacctg gcacaggtaa aaccttgtta gccaaagcag
781tagcaaacca aacctcagcc actttcttga gagtggttgg ctctgaactt attcagaagt
841acctaggtga tgggcccaaa ctcgtacggg aattgttccg agttgctgaa gaacatgcac
901cgtccatcgt gtttattgat gaaattgacg ccattgggac aaaaagatat gactccaatt
961ctggtggtga gagagaaatt cagcgaacaa tgttggaact gctgaaccag ttggatggat
1021ttgattctag gggagatgtg aaagttatca tggccacaaa ccgaatagaa actttggatc
1081cagcacttat cagaccaggc cgcattgaca ggaagattga gttccccctg cctgatgaaa
1141agacgaagaa gcgcatattt cagattcaca caagcaggat gacgctggct gatgatgtaa
1201ccctggacga cctgatcatg gctaaagatg acctctctgg tgctgacatc aaggcaatct
1261gtacagaagc tggtctgatg gccttaagag aacgtagaat gaaagtaaca aatgaagact
1321tcaaaaaatc taaagaaaat gttctttata agaaacagga aggcacccct gaggggctgt
1381atctctnncc aactttcttg tacaaagttg gcattataag aaagcattgc ttatcaattt
1441gttgcaacga ac

Download FASTA (ORF) (Full)