Construct: ORF ccsbBroadEn_15594

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018289.1_s300c1, BRDN0000394007
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC6A13 (6540)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6540 SLC6A13 solute carrier family 6 mem... NM_001243392.2 100% 100%
2 human 6540 SLC6A13 solute carrier family 6 mem... XM_017019846.1 25.3% 21.4% (many diffs)
3 human 6540 SLC6A13 solute carrier family 6 mem... XM_017019847.1 25.3% 21.4% (many diffs)
4 human 6540 SLC6A13 solute carrier family 6 mem... XM_017019844.1 21% 17.8% (many diffs)
5 human 6540 SLC6A13 solute carrier family 6 mem... NM_001190997.2 17.5% 14.6% (many diffs)
6 human 6540 SLC6A13 solute carrier family 6 mem... XR_001748849.1 15.4% (many diffs)
7 human 6540 SLC6A13 solute carrier family 6 mem... NM_016615.5 13.8% 11.8% (many diffs)
8 human 6540 SLC6A13 solute carrier family 6 mem... XR_002957372.1 11% (many diffs)
9 mouse 14412 Slc6a13 solute carrier family 6 (ne... NM_144512.2 14% 10.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
357
ORF length:
291
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgga tagcagggtc tcaggcacaa ccagtaatgg agagacaaaa ccagtgtatc
121cagtcatgga aaagaaggag gaagatggca ccctggagcg ggggcactgg aacaacaaga
181tggagtttgt gctgtcagtg gctggggaga tcattggctt aggcaacgtc tggaggtttc
241cctatctctg ctacaaaaat gggggaggtg agatgagagc ccttgtgcca ccccacccac
301tcctggaagg aggatacttc catctcctgc acttacggcc cctctgggga gtcccatnnc
361caactttctt gtacaaagtt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
421aac

Download FASTA (ORF) (Full)