Construct: ORF ccsbBroadEn_15594
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018289.1_s300c1, BRDN0000394007
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC6A13 (6540)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6540 | SLC6A13 | solute carrier family 6 mem... | NM_001243392.2 | 100% | 100% | |
| 2 | human | 6540 | SLC6A13 | solute carrier family 6 mem... | XM_017019846.1 | 25.3% | 21.4% | (many diffs) |
| 3 | human | 6540 | SLC6A13 | solute carrier family 6 mem... | XM_017019847.1 | 25.3% | 21.4% | (many diffs) |
| 4 | human | 6540 | SLC6A13 | solute carrier family 6 mem... | XM_017019844.1 | 21% | 17.8% | (many diffs) |
| 5 | human | 6540 | SLC6A13 | solute carrier family 6 mem... | NM_001190997.2 | 17.5% | 14.6% | (many diffs) |
| 6 | human | 6540 | SLC6A13 | solute carrier family 6 mem... | XR_001748849.1 | 15.4% | (many diffs) | |
| 7 | human | 6540 | SLC6A13 | solute carrier family 6 mem... | NM_016615.5 | 13.8% | 11.8% | (many diffs) |
| 8 | human | 6540 | SLC6A13 | solute carrier family 6 mem... | XR_002957372.1 | 11% | (many diffs) | |
| 9 | mouse | 14412 | Slc6a13 | solute carrier family 6 (ne... | NM_144512.2 | 14% | 10.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 357
- ORF length:
- 291
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgga tagcagggtc tcaggcacaa ccagtaatgg agagacaaaa ccagtgtatc 121 cagtcatgga aaagaaggag gaagatggca ccctggagcg ggggcactgg aacaacaaga 181 tggagtttgt gctgtcagtg gctggggaga tcattggctt aggcaacgtc tggaggtttc 241 cctatctctg ctacaaaaat gggggaggtg agatgagagc ccttgtgcca ccccacccac 301 tcctggaagg aggatacttc catctcctgc acttacggcc cctctgggga gtcccatnnc 361 caactttctt gtacaaagtt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 421 aac