Transcript: Human XR_001748849.1

PREDICTED: Homo sapiens solute carrier family 6 member 13 (SLC6A13), transcript variant X2, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC6A13 (6540)
Length:
1620
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001748849.1
NBCI Gene record:
SLC6A13 (6540)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001748849.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000042917 CGGGTCTTGAAGATCTCTGAT pLKO.1 621 3UTR 100% 4.950 6.930 N SLC6A13 n/a
2 TRCN0000042913 CGTCTACTACATCATTGTGTT pLKO.1 431 3UTR 100% 4.950 3.960 N SLC6A13 n/a
3 TRCN0000042915 CGCTTCTACGACAACATCGAA pLKO.1 1576 3UTR 100% 3.000 2.400 N SLC6A13 n/a
4 TRCN0000423193 CTACCTCGTCTTCCTCTTTAC pLKO_005 272 3UTR 100% 10.800 7.560 N SLC6A13 n/a
5 TRCN0000414936 TCCTCATCCTTGGAGTATCTG pLKO_005 1306 3UTR 100% 4.950 3.465 N SLC6A13 n/a
6 TRCN0000042916 CCAGTGTATCCAGTCATGGAA pLKO.1 99 3UTR 100% 3.000 2.100 N SLC6A13 n/a
7 TRCN0000079830 GCCAGTTTGTGTGTGTAGAAA pLKO.1 1222 3UTR 100% 5.625 3.375 N Slc6a13 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001748849.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000469635 CTCGCGCCTGGTAACTGACACCCA pLX_317 22.5% 74.6% V5 (many diffs) n/a
2 ccsbBroadEn_15594 pDONR223 0% 15.4% None (many diffs) n/a
3 ccsbBroad304_15594 pLX_304 0% 15.4% V5 (many diffs) n/a
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