Construct: ORF ccsbBroadEn_15605
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012121.1_s300c1, BRDN0000389838
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TBCD (6904)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6904 | TBCD | tubulin folding cofactor D | XM_017024988.1 | 90.6% | 90.6% | (many diffs) |
| 2 | human | 6904 | TBCD | tubulin folding cofactor D | NM_005993.5 | 62.8% | 59.6% | 30C>T;2123_2307del;2436_3576del |
| 3 | human | 6904 | TBCD | tubulin folding cofactor D | XM_005256396.4 | 61.4% | 58.2% | (many diffs) |
| 4 | human | 6904 | TBCD | tubulin folding cofactor D | XM_006722290.2 | 60.6% | 57.3% | (many diffs) |
| 5 | human | 6904 | TBCD | tubulin folding cofactor D | XR_001752597.1 | 57.8% | (many diffs) | |
| 6 | human | 6904 | TBCD | tubulin folding cofactor D | XM_017024987.1 | 57.6% | 54.4% | 0_1ins189;1934_2118del;2247_3387del |
| 7 | human | 6904 | TBCD | tubulin folding cofactor D | XR_001752599.1 | 53.6% | (many diffs) | |
| 8 | human | 6904 | TBCD | tubulin folding cofactor D | XM_011523590.1 | 52.9% | 49.7% | (many diffs) |
| 9 | human | 6904 | TBCD | tubulin folding cofactor D | XR_001752598.1 | 52.1% | (many diffs) | |
| 10 | human | 6904 | TBCD | tubulin folding cofactor D | XR_430033.2 | 52% | (many diffs) | |
| 11 | human | 6904 | TBCD | tubulin folding cofactor D | XM_011523589.2 | 48.4% | 41% | (many diffs) |
| 12 | human | 6904 | TBCD | tubulin folding cofactor D | XM_011523591.2 | 48.4% | 40.4% | (many diffs) |
| 13 | human | 6904 | TBCD | tubulin folding cofactor D | XR_001752600.1 | 42% | (many diffs) | |
| 14 | human | 6904 | TBCD | tubulin folding cofactor D | XM_011523593.2 | 41.8% | 38.5% | (many diffs) |
| 15 | human | 6904 | TBCD | tubulin folding cofactor D | XM_005256399.5 | 26.6% | 23.1% | (many diffs) |
| 16 | human | 6904 | TBCD | tubulin folding cofactor D | XM_006722291.4 | 26.4% | 23% | (many diffs) |
| 17 | human | 6904 | TBCD | tubulin folding cofactor D | XM_011523594.2 | 25.6% | 19.2% | (many diffs) |
| 18 | human | 6904 | TBCD | tubulin folding cofactor D | XM_011523595.3 | 25.5% | 19.3% | (many diffs) |
| 19 | human | 6904 | TBCD | tubulin folding cofactor D | XM_011523597.2 | 19.6% | 16.4% | (many diffs) |
| 20 | human | 6904 | TBCD | tubulin folding cofactor D | XM_011523598.1 | 19.4% | 16.2% | (many diffs) |
| 21 | human | 6904 | TBCD | tubulin folding cofactor D | XM_011523599.2 | 19.4% | 16.4% | (many diffs) |
| 22 | human | 6904 | TBCD | tubulin folding cofactor D | XM_017024989.1 | 16.9% | 13.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2316
- ORF length:
- 2250
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatggc cctgagcgac gaaccggccg cgggtggccc cgaggaggag gcggaggacg 121 agacactggc ctttggcgcg gcgctggaag cgttcggcga gagcgcggag acccgggcgc 181 tgctgggccg cctgcgggag gtgcacggcg gcggcgcgga gcgcgaggtg gccctggagc 241 ggttccgcgt aataatggac aaataccagg agcagcctca tctgttggac ccgcaccttg 301 aatggatgat gaacttgttg ttggacatag tgcaagatca gacatctcca gcttcccttg 361 tacatctggc ttttaaattt ctttacatca tcaccaaggt tcgaggctat aaaacatttc 421 ttcgtttatt tcctcatgaa gttgccgatg tagagcctgt tttagatttg gtcacaattc 481 agaatcccaa ggaccatgaa gcttgggaaa cccgctacat gcttttgctc tggctctccg 541 tgacctgcct gatccctttt gatttttctc gccttgacgg gaacctcctc acccagcctg 601 ggcaagcacg aatgtccata atggaccgta ttctccaaat agcagagtcc tacttgattg 661 tcagtgacaa ggcccgagat gcagctgctg tccttgtgtc cagatttatc acacgtcctg 721 atgtcaagca aagcaagatg gctgagttcc tggactggag cctgtgcaat ctggcccgtt 781 cctccttcca gaccatgcag ggggtcatca ccatggatgg gacgctgcag gccctggcac 841 aaatatttaa acatggaaaa cgtgaagact gtttgcccta tgctgccact gtcctcaggt 901 gcctcgatgg ctgcagactc cctgagagca accagaccct gctgcggaag ctgggggtga 961 agcttgtgca gcgactgggg ctgacattcc tgaagccgaa ggtggcagca tggaggtacc 1021 agcgtggctg ccgatctttg gctgcaaatc tgcagctcct cactcagggt cagagtgagc 1081 agaagccact catcctgacc gaagatgacg acgaagatga cgacgtccca gagggggtgg 1141 agcgtgtgat agagcagctg ctggtcgggc tgaaggacaa ggacacggtc gtgcggtggt 1201 ctgcagccaa gggcatcggt aggatggctg gcaggcttcc cagagccctg gcggatgatg 1261 tggtcgggtc tgtgctggac tgcttcagtt tccaggagac tgacaaggcg tggcatgggg 1321 gatgtctggc gctggcagag ctgggcagga gaggcctgtt gctgccgtct cgactcgtgg 1381 atgttgtcgc cgtgatcctg aaggcgctga cctacgacga gaagcggggt gcctgcagcg 1441 tgggcaccaa cgtcagggac gccgcctgct acgtgtgctg ggccttcgcg cgtgcctatg 1501 agcctcagga gctgaagccc tttgtgactg caatctcgag tgcactggtg attgctgcgg 1561 tgtttgaccg agacataaac tgcagaagag cagcctctgc cgccttccag gagaatgtgg 1621 ggagacaggg cactttccct catggtattg atattttgac cacagctgac tattttgccg 1681 tcggtaacag atccaactgt ttcctggtta taagtgtgtt tattgccggc tttcctgagt 1741 acacgcagcc aatgatagac cacctggtta ccatgaagat cagccactgg gatggggtca 1801 tccgagagtt ggctgcgagg gcgctgcaca acctggccca gcaggcaccc gagttcagcg 1861 ccacgcaagt cttcccgagg ctgctgtcca tgacactgag tccagatctt cacatgaggc 1921 atgggtcgat tctcgcctgc gcagaagttg cttacgcctt gtacaaactt gcagcccaag 1981 agaacaggcc cgtcacggac catctggacg agcaggcagt gcagggcctg aagcagattc 2041 accagcagct ctatgatcgt cagttataca ggggtctggg aggacagctc atgagacaag 2101 cagtgtgtgt tttaatagaa aagttgtcac tttccaaaat gccctttaga ggtgacaccg 2161 taattgatgg ttggcaatgg ctgataaatg actcgctgtg gcttctcgtt ggccttgggc 2221 gcccttccag gcttccttct gaaaggccgg ctccagcagg ttctcacagg tttaagagca 2281 gttacccaca cttcccccga ggacgtaagt tttgctnncc aactttcttg tacaaagttg 2341 gcattataag aaagcattgc ttatcaattt gttgcaacga ac