Construct: ORF ccsbBroadEn_15606
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018062.1_s300c1, BRDN0000390458
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TBCD (6904)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6904 | TBCD | tubulin folding cofactor D | XM_005256404.4 | 98.7% | 98.5% | (many diffs) |
| 2 | human | 6904 | TBCD | tubulin folding cofactor D | XM_006722292.3 | 98.7% | 98.5% | (many diffs) |
| 3 | human | 6904 | TBCD | tubulin folding cofactor D | XM_011523600.3 | 98.7% | 98.5% | (many diffs) |
| 4 | human | 6904 | TBCD | tubulin folding cofactor D | XM_017024990.2 | 98.7% | 98.5% | (many diffs) |
| 5 | human | 6904 | TBCD | tubulin folding cofactor D | XM_024450899.1 | 98.7% | 98.5% | (many diffs) |
| 6 | human | 6904 | TBCD | tubulin folding cofactor D | XM_024450900.1 | 98.7% | 98.5% | (many diffs) |
| 7 | human | 6904 | TBCD | tubulin folding cofactor D | XM_024450901.1 | 98.7% | 98.5% | (many diffs) |
| 8 | human | 6904 | TBCD | tubulin folding cofactor D | XM_024450902.1 | 98.7% | 98.5% | (many diffs) |
| 9 | human | 6904 | TBCD | tubulin folding cofactor D | XM_017024989.1 | 96.2% | 96.1% | (many diffs) |
| 10 | human | 6904 | TBCD | tubulin folding cofactor D | XM_011523599.2 | 92% | 91.8% | (many diffs) |
| 11 | human | 6904 | TBCD | tubulin folding cofactor D | XM_011523598.1 | 91.7% | 91.5% | (many diffs) |
| 12 | human | 6904 | TBCD | tubulin folding cofactor D | XM_011523597.2 | 91.6% | 91.4% | (many diffs) |
| 13 | human | 6904 | TBCD | tubulin folding cofactor D | XM_011523595.3 | 82.1% | 82% | (many diffs) |
| 14 | human | 6904 | TBCD | tubulin folding cofactor D | XM_006722291.4 | 81.8% | 81.7% | (many diffs) |
| 15 | human | 6904 | TBCD | tubulin folding cofactor D | XM_005256399.5 | 81.4% | 81.2% | (many diffs) |
| 16 | human | 6904 | TBCD | tubulin folding cofactor D | XM_011523594.2 | 80.9% | 80.8% | (many diffs) |
| 17 | human | 6904 | TBCD | tubulin folding cofactor D | XM_011523593.2 | 66% | 65.9% | (many diffs) |
| 18 | human | 6904 | TBCD | tubulin folding cofactor D | XM_011523591.2 | 58% | 57.9% | (many diffs) |
| 19 | human | 6904 | TBCD | tubulin folding cofactor D | XM_011523589.2 | 57.7% | 57.6% | (many diffs) |
| 20 | human | 6904 | TBCD | tubulin folding cofactor D | XM_017024987.1 | 55% | 55% | (many diffs) |
| 21 | human | 6904 | TBCD | tubulin folding cofactor D | XM_011523590.1 | 53.9% | 51.4% | (many diffs) |
| 22 | human | 6904 | TBCD | tubulin folding cofactor D | XM_006722290.2 | 53.1% | 52.5% | (many diffs) |
| 23 | human | 6904 | TBCD | tubulin folding cofactor D | XM_005256396.4 | 52.9% | 52.8% | (many diffs) |
| 24 | human | 6904 | TBCD | tubulin folding cofactor D | NM_005993.5 | 52.1% | 52% | (many diffs) |
| 25 | human | 6904 | TBCD | tubulin folding cofactor D | XR_001752597.1 | 47.9% | (many diffs) | |
| 26 | human | 6904 | TBCD | tubulin folding cofactor D | XR_001752599.1 | 44.5% | (many diffs) | |
| 27 | human | 6904 | TBCD | tubulin folding cofactor D | XR_001752598.1 | 43.2% | (many diffs) | |
| 28 | human | 6904 | TBCD | tubulin folding cofactor D | XR_430033.2 | 40.3% | (many diffs) | |
| 29 | human | 6904 | TBCD | tubulin folding cofactor D | XR_001752600.1 | 32.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1935
- ORF length:
- 1869
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgaa gatcagccac tgggatgggg tcatccgaga gttggctgcg agggcgctgc 121 acaacctggc ccagcaggca cccgagttca gcgccacgca agtcttcccg aggctgctgt 181 ccatgacact gagtccagat cttcacacga ggcatgggtc gattctcgcc tgcgcagaag 241 ttgcttacgc cttgtacaaa cttgcagccc aagagaacag gcccgtcacg gaccatctgg 301 acgagcaggc agtgcagggc ctgaagcaga ttcaccagca gctctatgat cgtcagttat 361 acaggggtct gggaggacag ctcatgagac aagcagtgtg tgttttaata gaaaagttgt 421 cactttccaa aatgcccttt agaggtgaca ccgtaattga tggttggcaa tggctgataa 481 atgacacttt gagacatctc catctcatct caagtcactc ccgccagcag atgaaggatg 541 cagcagtctc ggccctggct gctctatgca gtgaatatta catgaaggag ccgggggagg 601 cagatcccgc aattcaggag gagctgatca cgcagtacct ggctgagctt cggaaccccg 661 aggagatgac tcgctgtggc ttctcgttgg ccttgggcgc ccttccaggc ttccttctga 721 aaggccggct ccagcaggtt ctcacaggtt taagagcagt tacccacact tcccccgagg 781 acgtaagttt tgctgagtcc aggagagacg gcttgaaggc cattgcgagg atttgccaga 841 ctgttggtgt gaaagcagga gccccagacg aagctgtgtg cggagagaat gtttcccaga 901 tttactgtgc gctgctgggc tgcatggacg actacaccac ggacagcaga ggggacgtgg 961 gcacctgggt ccgcaaggcc gccatgacca gtctgatgga tctgacactt ctgctggctc 1021 ggagccagcc tgagctgatc gaggcccata cctgtgagcg catcatgtgc tgtgtggccc 1081 agcaggccag tgagaagatt gaccgtttcc gtgctcacgc cgccagcgtg ttcctgacgc 1141 tcctgcactt tgacagccct cccatccccc acgtgcccca ccgaggagaa ctggaaaagc 1201 tgtttcccag gtccgacgtg gcctccgtga actggagtgc accttcccag gccttcccac 1261 gcatcaccca gctccttggg ctgcccacct accgctacca cgtcctgctg gggctagtcg 1321 tgtccctggg cggcttgacg gagtcgacga tccggcactc cacccagagc ctctttgagt 1381 acatgaaggg cattcagagc gacccgcagg ccctgggcag cttcagcggg acccttctgc 1441 agatctttga ggacaacctt ctgaatgaga gggtgtccgt gccgctgctg aagacgctgg 1501 accacgtgct cacccacggc tgcttcgaca tcttcaccac ggaggaggac cacccctttg 1561 ctgtgaagtt gcttgcgctc tgtaagaaag aaatcaagaa ttcaaaagat atccagaagc 1621 tcctgtcagg catcgcagtg ttctgcggga tggtgcagtt ccccggcgac gtgaggaggc 1681 aggccctcct gcagctgtgt ctgctcctct gccaccgttt cccgctgatc cggaagacca 1741 cggccagcca ggtgtacgag acattgctca cctacagtga cgtcgtgggc gcggatgtgc 1801 tggacgaggt ggtgactgtg ctcagtgaca ctgcgtggga cgcggagctt gcagtggtga 1861 gagagcagcg caaccgtctg tgtgaccttc tgggcgtacc caggccccag ctggtgcccc 1921 agcctggtgc ctgctnncca actttcttgt acaaagttgg cattataaga aagcattgct 1981 tatcaatttg ttgcaacgaa c