Construct: ORF ccsbBroadEn_15683

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011996.1_s300c1, BRDN0000387234
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TMCC2 (9911)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9911 TMCC2 transmembrane and coiled-co... NM_001297613.1 59.4% 43.4% (many diffs)
2 human 9911 TMCC2 transmembrane and coiled-co... NM_001297611.1 57.6% 42.1% (many diffs)
3 human 9911 TMCC2 transmembrane and coiled-co... NM_001331034.1 54.3% 39.8% (many diffs)
4 human 9911 TMCC2 transmembrane and coiled-co... NM_001242925.1 44.3% 32.7% (many diffs)
5 human 9911 TMCC2 transmembrane and coiled-co... XM_005245684.2 44.3% 32.7% (many diffs)
6 human 9911 TMCC2 transmembrane and coiled-co... XM_005245685.4 44.3% 32.7% (many diffs)
7 human 9911 TMCC2 transmembrane and coiled-co... XM_005245686.3 39.9% 32.3% (many diffs)
8 human 9911 TMCC2 transmembrane and coiled-co... NM_014858.4 39.5% 29.2% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1002
ORF length:
936
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgga ggagaaggtg gcctaccagt cctatgagag ggcacgggac atccaggagg
121ccgtggagtc ctgcctgacc cgggtcacca agctggagct gcagcagcaa cagcagcagg
181tggtacagct ggagggcgtg gagaatgcca acgcgcgggc gctgctgggc aagttcatca
241acgtgcgcgc aggcatcagc ggctttgggg gcggcgtggt ggagggcgtc aagggcagcc
301tctctggcct ctcacaggcc acccacaccg ccgtggtgtc caagccccgg gagtttgcca
361gcctcatccg caacaagttt ggcagtgctg acaacatcgc ccacctgaag gaccccctgg
421aagatgggcc ccctgaggag gcagcccggg cactgagcgg cagtgccaca ctcgtctcca
481gccccaagta tggcagcgat gatgagtgct ccagcgccag cgccagctca gccggggcag
541gcagcaactc tggggctggg cctggtgggg cgctggggag ccctaagtcc aatgcactgt
601atggtgctcc tggaaacctg gatgctctgc tggaagagct acgggagatc aaggagggac
661agtctcacct ggaggactcc atggaagacc tgaagactca gctgcagagg gactacacct
721acatgaccca gtgcctgcag gaggagcgct acaggtacga gcggctggag gagcagctca
781acgacctgac tgagcttcat cagaacgaga tgacgaacct gaagcaggag ctggccacac
841ttctccagga gggacccttg gacttctttg tgtgtccagt ttggcctcct gcccaaactg
901tccattccag cagctcctgc ccccttctct gtacttgctt ctgtctgaca ccttctccct
961gttggcctga agggagctta gaatgcagcc ctacctggag atnnccaact ttcttgtaca
1021aagttggcat tataagaaag cattgcttat caatttgttg caacgaac

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