Construct: ORF ccsbBroadEn_15702

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006482.1_s300c1, BRDN0000396715
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TNIP1 (10318)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10318 TNIP1 TNFAIP3 interacting protein 1 NM_001252390.2 99.9% 99.8% 443G>A
2 human 10318 TNIP1 TNFAIP3 interacting protein 1 NM_001252391.2 99.9% 99.8% 443G>A
3 human 10318 TNIP1 TNFAIP3 interacting protein 1 NM_001258454.2 99.9% 99.8% 443G>A
4 human 10318 TNIP1 TNFAIP3 interacting protein 1 NM_006058.5 99.9% 99.8% 443G>A
5 human 10318 TNIP1 TNFAIP3 interacting protein 1 NM_001252392.2 98.1% 97.8% (many diffs)
6 human 10318 TNIP1 TNFAIP3 interacting protein 1 NM_001252393.2 98.1% 97.8% (many diffs)
7 human 10318 TNIP1 TNFAIP3 interacting protein 1 NM_001252385.1 95.5% 93.8% 443G>A;1779_1795del;1857_1858ins68
8 human 10318 TNIP1 TNFAIP3 interacting protein 1 XM_005268355.2 95.5% 93.8% 443G>A;1779_1795del;1857_1858ins68
9 human 10318 TNIP1 TNFAIP3 interacting protein 1 XM_017008950.2 95.5% 93.8% 443G>A;1779_1795del;1857_1858ins68
10 human 10318 TNIP1 TNFAIP3 interacting protein 1 NM_001252386.2 91.6% 91.5% 0_1ins159;284G>A
11 human 10318 TNIP1 TNFAIP3 interacting protein 1 XM_017008945.2 90.6% 88.6% (many diffs)
12 human 10318 TNIP1 TNFAIP3 interacting protein 1 XM_017008946.2 90.6% 88.6% (many diffs)
13 human 10318 TNIP1 TNFAIP3 interacting protein 1 XM_017008947.2 90.6% 88.6% (many diffs)
14 human 10318 TNIP1 TNFAIP3 interacting protein 1 NM_001258455.1 89.8% 89.7% 443G>A;1586_1587ins192
15 human 10318 TNIP1 TNFAIP3 interacting protein 1 NM_001364487.2 89.8% 89.7% 443G>A;1586_1587ins192
16 human 10318 TNIP1 TNFAIP3 interacting protein 1 NM_001364486.2 89.8% 89.5% (many diffs)
17 human 10318 TNIP1 TNFAIP3 interacting protein 1 XM_006714752.3 88.1% 87.8% (many diffs)
18 human 10318 TNIP1 TNFAIP3 interacting protein 1 NM_001258456.1 83.7% 83.9% (many diffs)
19 human 10318 TNIP1 TNFAIP3 interacting protein 1 XM_017008948.2 83% 81.1% (many diffs)
20 human 10318 TNIP1 TNFAIP3 interacting protein 1 XM_017008949.2 81.4% 79.6% (many diffs)
21 mouse 57783 Tnip1 TNFAIP3 interacting protein 1 NM_001199275.2 83.1% 82.5% (many diffs)
22 mouse 57783 Tnip1 TNFAIP3 interacting protein 1 NM_021327.4 83.1% 82.5% (many diffs)
23 mouse 57783 Tnip1 TNFAIP3 interacting protein 1 XM_006533846.3 83.1% 82.5% (many diffs)
24 mouse 57783 Tnip1 TNFAIP3 interacting protein 1 NM_001271456.1 81.9% 81.3% (many diffs)
25 mouse 57783 Tnip1 TNFAIP3 interacting protein 1 XM_011249162.1 81.9% 81.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1974
ORF length:
1908
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgga agggagagga ccgtaccgga tctacgaccc tgggggcagc gtgccctcag
121gagaggcatc cgcagctttt gagcgcctag tgaaggagaa ttcccggctg aaggaaaaaa
181tgcaagggat aaagatgtta ggggagcttt tggaagagtc ccagatggaa gcgaccaggc
241tccggcagaa ggcagaggag ctagtgaagg acaacgagct gctcccacca ccttctccct
301ccttgggctc cttcgacccc ctggctgagc tcacaggaaa ggactcaaat gtcacagcat
361ctcccacagc ccctgcatgc cccagtgaca agccagcacc agtccagaag cctccatcca
421gtggcacctc ctctgaattt gaagtggtca ctcctgagga gcagaattca ccagagagca
481gcagccatgc caatgcgatg gcgctggacc ccctgccccg tgaggacggc aacctgatgc
541tgcacctgca gcgcctggag accacgctga gtgtgtgtgc cgaggagccg gaccacggcc
601agctcttcac ccacctgggc cgcatggccc tggagttcaa ccgactggca tccaaggtgc
661acaagaatga gcagcgcacc tccattctgc agaccctgtg tgagcagctt cggaaggaga
721acgaggctct gaaggccaag ttggataagg gcctggaaca gcgggatcag gctgccgaga
781ggctgcggga ggaaaatttg gagctcaaga agttgttgat gagcaatggc aacaaagagg
841gtgcgtctgg gcggccaggc tcaccgaaga tggaagggac aggcaagaag gcagtggctg
901gacagcagca ggctagtgtg acggcaggta aggtcccaga ggtggtggcc ttgggcgcag
961ccgagaagaa ggtgaagatg ctggagcagc agcgcagtga gctgctggaa gtgaacaagc
1021agtgggacca gcatttccgg tccatgaagc agcagtatga gcagaagatc actgagctgc
1081gtcagaagct ggctgatttg cagaagcagg tgactgacct ggaggccgag cgggagcaga
1141agcagcgtga ctttgaccgc aagctcctcc tggccaagtc caagattgaa atggaggaga
1201ccgacaagga gcagctgaca gcagaggcca aggagctgcg ccaaaaggtc aagtacctgc
1261aggatcagct gagcccactc acccgacagc gtgagtacca ggaaaaggag atccagcggc
1321tcaacaaggc cctggaggaa gcactgagca tccaaacccc gccatcatct ccaccaacag
1381catttgggag cccagaagga gcaggggccc tcctaaggaa acaggagctg gtcacgcaga
1441atgagttgct gaaacagcag gtgaagatct tcgaggagga cttccagagg gagcgcagtg
1501atcgtgagcg catgaatgag gagaaggaag agctgaagaa gcaagtggag aagctgcagg
1561cccaggtcac cctgtcaaat gcccagctaa aagcattcaa agatgaggag aaggcaagag
1621aagccctcag acagcagaag aggaaagcaa aggcctcagg agagcgttac catgtggagc
1681cccacccaga acatctctgc ggggcctacc cctacgccta cccgcccatg ccagccatgg
1741tgccacacca tggcttcgag gactggtccc agatccgcta cccccctccc cccatggcca
1801tggagcaccc gcccccactc cccaactcgc gcctcttcca tctgccggaa tacacctggc
1861gtctaccctg tggaggggtt cgaaatccaa atcagagctc ccaagtgatg gaccctccca
1921cagccaggcc tacagaacca gagtctccaa aaaatgaccg tgaggggcct cagtnnccaa
1981ctttcttgta caaagttggc attataagaa agcattgctt atcaatttgt tgcaacgaac

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