Construct: ORF ccsbBroadEn_15748
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018265.1_s300c1, BRDN0000395940
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TBC1D9B (23061)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23061 | TBC1D9B | TBC1 domain family member 9B | NM_015043.4 | 41.3% | 41.2% | 1_2169del;3305A>C |
| 2 | human | 23061 | TBC1D9B | TBC1 domain family member 9B | NM_198868.3 | 40.7% | 40.7% | 1_2169del;2861_2911del;3356A>C |
| 3 | mouse | 76795 | Tbc1d9b | TBC1 domain family, member 9B | NM_029745.2 | 35.1% | 36.6% | (many diffs) |
| 4 | mouse | 76795 | Tbc1d9b | TBC1 domain family, member 9B | NM_001290760.1 | 34.7% | 36.1% | (many diffs) |
| 5 | mouse | 76795 | Tbc1d9b | TBC1 domain family, member 9B | NM_001290759.1 | 34.6% | 36.1% | (many diffs) |
| 6 | mouse | 76795 | Tbc1d9b | TBC1 domain family, member 9B | XM_006534458.3 | 34.1% | 35.7% | (many diffs) |
| 7 | mouse | 76795 | Tbc1d9b | TBC1 domain family, member 9B | XR_001780074.1 | 22.4% | (many diffs) | |
| 8 | mouse | 76795 | Tbc1d9b | TBC1 domain family, member 9B | XR_388553.3 | 20% | (many diffs) | |
| 9 | mouse | 76795 | Tbc1d9b | TBC1 domain family, member 9B | XR_388552.3 | 19.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1596
- ORF length:
- 1530
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgac catgctgggc agatacctgg ataatgtggt caacaagcag agtgtctctc 121 ctcctatccc gcacctccgt gccttgctga gcagcagcga tgacccccct gcagaggtgg 181 acatctttga gctcctgaaa gtgtcctatg agaaattcag cagcctgagg gccgaagaca 241 ttgagcagat gcggtttaaa cagaggctga aagtgatcca gtccttggag gacacggcca 301 agaggagtgt ggtccgagct atacctgtgg acattggttt ctccattgaa gagctggagg 361 acctttacat ggtgtttaag gccaagcacc tggctagcca gtactggggg tgcagccgca 421 caatggccgg ccgtcgggac cccagcctgc cctacctgga gcagtaccgg attgatgcca 481 gccagttccg ggaactcttt gccagcctga caccctgggc ctgtggctcc cacacacctc 541 tgctggcagg gcgcatgttc aggctcctgg acgaaaacaa ggactcgctg atcaacttca 601 aggagttcgt gacagggatg agcgggatgt accacgggga cctgacagag aagctcaagg 661 tgctctacaa gctacacctt cccccagctc tgagcccaga ggaagccgag tcagccctgg 721 aggcggccca ttatttcaca gaggacagct cctcagaaga agcactacca caggaagagc 781 aagaaggaag tggaagtgag gagagaggag aggagaaggg gaccagctct ccggactatc 841 ggcactacct tcgaatgtgg gccaaggaga aagaggctca gaaggagacg attaaggatc 901 ttcccaagat gaaccaggag cagttcattg agctgtgcaa gacgctttac aacatgttca 961 gtgaagaccc catggagcag gacctgtacc acgccatcgc caccgtggcc agcctcctgc 1021 tccgcatcgg agaggtgggg aagaagttct cagcccgcac aggcaggaag cccagggact 1081 gtgccactga ggaggacgag ccaccagcac ccgaactgca tcaggacgca gccagggagc 1141 ttcagccccc agctgcagga gacccccaag ccaaagcagg cggagacaca cacctcggaa 1201 cagccccaca ggagagccag gtggtggtgg aggggggcag cggcgaggga cagggctcac 1261 cctcccagct gctgtctgac gatgaaacca aagacgacat gtccatgtcc tcctactcgg 1321 tggtcagcac gggctccctg caatgtgaag accttgcaga cgacacggtg ctggtgggcg 1381 gggaggcctg cagccccaca gcgcgcatcg gcggcaccgt cgacaccgac tggtgcatct 1441 cctttgagca gatcctggcc tccatcctga cggagtccgt gctggtgaac ttctttgaga 1501 agagagtgga cattggactc aagatcaagg accaaaagaa agtggagaga cagttcagca 1561 ccgccagtga ccatgagcag cctggagttt ccggctnncc aactttcttg tacaaagttg 1621 gcattataag aaagcattgc ttatcaattt gttgcaacga ac