Construct: ORF ccsbBroadEn_15760
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015976.1_s300c1, BRDN0000396127
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ITGB3BP (23421)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23421 | ITGB3BP | integrin subunit beta 3 bin... | NM_001347148.1 | 100% | 100% | |
| 2 | human | 23421 | ITGB3BP | integrin subunit beta 3 bin... | XM_017000854.2 | 85.6% | 80% | (many diffs) |
| 3 | human | 23421 | ITGB3BP | integrin subunit beta 3 bin... | XM_024446042.1 | 85.6% | 80% | (many diffs) |
| 4 | human | 23421 | ITGB3BP | integrin subunit beta 3 bin... | NM_014288.4 | 77.4% | 77.4% | 1_120del |
| 5 | human | 23421 | ITGB3BP | integrin subunit beta 3 bin... | NM_001347147.1 | 73.1% | 69.4% | (many diffs) |
| 6 | human | 23421 | ITGB3BP | integrin subunit beta 3 bin... | NM_001347145.1 | 71.5% | 65.4% | (many diffs) |
| 7 | human | 23421 | ITGB3BP | integrin subunit beta 3 bin... | XM_017000853.2 | 67.7% | 63.5% | (many diffs) |
| 8 | human | 23421 | ITGB3BP | integrin subunit beta 3 bin... | XM_017000855.2 | 64.9% | 64.9% | 1_222del |
| 9 | human | 23421 | ITGB3BP | integrin subunit beta 3 bin... | NM_001206739.1 | 63.4% | 63.4% | 1_237del |
| 10 | human | 23421 | ITGB3BP | integrin subunit beta 3 bin... | XM_024446041.1 | 57.5% | 54.1% | (many diffs) |
| 11 | human | 23421 | ITGB3BP | integrin subunit beta 3 bin... | NR_045147.1 | 38.4% | 1_260del;623_672del;722_1069del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 477
- ORF length:
- 411
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgag tctatttgct tctcccacaa gttctgaaga gcaaaagcac agaaatggac 121 tatcaaatga aaagagaaaa aaattgaatc accccagttt aactgaaagc aaagaatcta 181 caacaaaaga caatgatgaa ttcatgatgt tgctatcaaa agttgagaaa ttgtcagaag 241 aaatcatgga gataatgcaa aatttaagta gtatacaggc tttggagggc agtagagagc 301 ttgaaaatct cattggaatc tcctgtgcat cacatttctt aaaaagagaa atgcagaaaa 361 ccaaagaact aatgacaaaa gtgaataaac aaaaactgtt tgaaaagagt acaggacttc 421 ctcacaaagc atcacgtcat cttgacagct atgaattcct taaagccatt ttaaactnnc 481 caactttctt gtacaaagtt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 541 aac