Construct: ORF ccsbBroadEn_15807
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001541.1_s300c1, BRDN0000394992
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- POM121L8P (29797)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 25812 | POM121L1P | POM121 transmembrane nucleo... | NR_024591.1 | 7.5% | (many diffs) | |
| 2 | human | 29774 | POM121L9P | POM121 transmembrane nucleo... | NR_003714.1 | 5.6% | (many diffs) | |
| 3 | human | 102725072 | LOC102725072 | Putative uncharacterized pr... | NR_135922.1 | 5.1% | 1_3255del;3297G>A;3562_5935del | |
| 4 | human | 29797 | POM121L8P | POM121 transmembrane nucleo... | NR_024583.1 | 3.9% | (many diffs) | |
| 5 | human | 646074 | POM121L10P | POM121 transmembrane nucleo... | NR_024593.1 | 3.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 375
- ORF length:
- 306
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcaccat gaagaaaaga cacagagaag gatgtgacat gcctgggcca tggagcactc 121 tgagatctca tcgcggacac cactgcccac acctccatcc cgtcctgcgc aggccgacac 181 tcactgacgt tgaaggctgc cttcagtgcc tggatgtctg cggccacccc agacatgcgg 241 tagatgccca cctcctccat gcctcggcgc tcgatctcct ccacgcactg gcgcacgatg 301 tagggcacct tggacctctc tctcctgcgg gaggagggaa tgttctcagt gtcctaacag 361 ccctgcttgg gccatnncca actttcttgt acaaagttgg cattataaga aagcattgct 421 tatcaatttg ttgcaacgaa c