Transcript: Human NR_024583.1

Homo sapiens POM121 transmembrane nucleoporin like 8, pseudogene (POM121L8P), non-coding RNA.

Source:
NCBI, updated 2018-05-24
Taxon:
Homo sapiens (human)
Gene:
POM121L8P (29797)
Length:
7716
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_024583.1
NBCI Gene record:
POM121L8P (29797)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_024583.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000162242 CAGAGGTCAGAAATCAGATAT pLKO.1 748 3UTR 100% 13.200 6.600 Y POM121L9P n/a
2 TRCN0000189224 GACTCAGCAGCAACACCAAAT pLKO.1 1979 3UTR 100% 10.800 5.400 Y POM121L8P n/a
3 TRCN0000163328 CCAGAGGTCAGAAATCAGATA pLKO.1 747 3UTR 100% 4.950 2.475 Y POM121L9P n/a
4 TRCN0000166031 CCCAGAGGTCAGAAATCAGAT pLKO.1 746 3UTR 100% 4.950 2.475 Y POM121L9P n/a
5 TRCN0000165033 GTCCAAGAGAATCCTGGTGAT pLKO.1 607 3UTR 100% 4.050 2.025 Y POM121L9P n/a
6 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 2829 3UTR 100% 5.625 2.813 Y KLHL30 n/a
7 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 2829 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_024583.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10587 pDONR223 100% 16.2% None (many diffs) n/a
2 ccsbBroad304_10587 pLX_304 0% 16.2% V5 (many diffs) n/a
3 TRCN0000472538 GCTGGAAACCAGACTTGAAGCAAA pLX_317 39.6% 16.2% V5 (many diffs) n/a
4 ccsbBroadEn_15807 pDONR223 0% 3.9% None (many diffs) n/a
5 ccsbBroad304_15807 pLX_304 0% 3.9% V5 (many diffs) n/a
6 TRCN0000471544 GACAGGCTGAGTGCTACTGTGTTA pLX_317 100% 3.9% V5 (many diffs) n/a
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