Construct: ORF ccsbBroadEn_15835
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014022.1_s300c1, BRDN0000393977
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TBC1D7 (51256)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51256 | TBC1D7 | TBC1 domain family member 7 | NM_001143966.3 | 100% | 100% | |
| 2 | human | 51256 | TBC1D7 | TBC1 domain family member 7 | NM_001143964.3 | 90.7% | 90.7% | 112_192del |
| 3 | human | 51256 | TBC1D7 | TBC1 domain family member 7 | NM_001143965.3 | 90.7% | 90.7% | 112_192del |
| 4 | human | 51256 | TBC1D7 | TBC1 domain family member 7 | NM_001318805.1 | 90.7% | 90.7% | 112_192del |
| 5 | human | 107080638 | TBC1D7-LOC100130357 | TBC1D7-LOC100130357 readthr... | NM_001318809.1 | 90.7% | 90.7% | 112_192del |
| 6 | human | 51256 | TBC1D7 | TBC1 domain family member 7 | NM_016495.6 | 90.7% | 90.7% | 112_192del |
| 7 | human | 51256 | TBC1D7 | TBC1 domain family member 7 | NM_001258457.2 | 75% | 75% | 112_192del;379_380ins138 |
| 8 | human | 51256 | TBC1D7 | TBC1 domain family member 7 | NM_001318806.2 | 50.7% | 40.6% | (many diffs) |
| 9 | human | 107080638 | TBC1D7-LOC100130357 | TBC1D7-LOC100130357 readthr... | NR_134872.2 | 43.1% | (many diffs) | |
| 10 | mouse | 67046 | Tbc1d7 | TBC1 domain family, member 7 | NM_001252639.1 | 76.9% | 82.2% | (many diffs) |
| 11 | mouse | 67046 | Tbc1d7 | TBC1 domain family, member 7 | NM_025935.3 | 76.9% | 82.2% | (many diffs) |
| 12 | mouse | 67046 | Tbc1d7 | TBC1 domain family, member 7 | XM_006516945.3 | 74.5% | 77.8% | (many diffs) |
| 13 | mouse | 67046 | Tbc1d7 | TBC1 domain family, member 7 | NM_001252640.1 | 65.1% | 69.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 864
- ORF length:
- 798
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgac tgaggactct cagagaaact ttcgttcagt atattatgag aaagtggggt 121 ttcgtggagt tgaagaaaag aaatcattag aaattctcct aaaagatgac cgtctgggaa 181 tcttgcctcc acaccacgag tcccatgcca aggtgatgat gtatcgtaag gagcagtact 241 tggatgtcct tcatgccctg aaagtcgttc gctttgttag tgatgccaca cctcaggctg 301 aagtctatct ccgcatgtat cagctggagt ctgggaagtt acctcgaagt ccctcttttc 361 cactggagcc agatgatgaa gtgtttcttg ccatagctaa agccatggag gaaatggtgg 421 aagatagtgt cgactgttac tggatcaccc gacgctttgt gaaccaatta aataccaagt 481 accgggattc cttgccccag ttgccaaaag cgtttgaaca atacttgaat ctggaagatg 541 gcagactgct gactcatctg aggatgtgtt ccgcggcgcc caaacttcct tatgatctct 601 ggttcaagag gtgctttgcg ggatgtttgc ctgaatccag tttacagagg gtttgggata 661 aagttgtgag tggatcctgt aagatcctag tttttgtagc tgtcgaaatt ttattaacct 721 ttaaaataaa agttatggca ctgaacagtg cagagaagat aacaaagttt ctggaaaata 781 ttccccagga cagctcagac gcgatcgtga gcaaggccat tgacttgtgg cacaaacact 841 gtgggacccc ggtccattca agctnnccaa ctttcttgta caaagttggc attataagaa 901 agcattgctt atcaatttgt tgcaacgaac