Construct: ORF ccsbBroadEn_15867
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008434.1_s300c1, BRDN0000398457
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TBC1D13 (54662)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54662 | TBC1D13 | TBC1 domain family member 13 | NM_018201.5 | 99.9% | 99.7% | 569T>C |
| 2 | human | 54662 | TBC1D13 | TBC1 domain family member 13 | XM_005252060.2 | 80.9% | 80.7% | 0_1ins228;341T>C |
| 3 | human | 54662 | TBC1D13 | TBC1 domain family member 13 | NM_001286772.1 | 68.7% | 68.7% | 543_544ins375 |
| 4 | mouse | 70296 | Tbc1d13 | TBC1 domain family, member 13 | NM_146252.3 | 90.4% | 97.7% | (many diffs) |
| 5 | mouse | 70296 | Tbc1d13 | TBC1 domain family, member 13 | XM_006498320.2 | 73% | 79.5% | (many diffs) |
| 6 | mouse | 70296 | Tbc1d13 | TBC1 domain family, member 13 | XM_006498321.2 | 73% | 79.5% | (many diffs) |
| 7 | mouse | 70296 | Tbc1d13 | TBC1 domain family, member 13 | XM_006498322.2 | 73% | 79.5% | (many diffs) |
| 8 | mouse | 70296 | Tbc1d13 | TBC1 domain family, member 13 | XM_017319254.1 | 73% | 79.5% | (many diffs) |
| 9 | mouse | 70296 | Tbc1d13 | TBC1 domain family, member 13 | XM_006498323.3 | 51.5% | 53.2% | (many diffs) |
| 10 | mouse | 70296 | Tbc1d13 | TBC1 domain family, member 13 | XM_006498324.2 | 49.8% | 53.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1269
- ORF length:
- 1200
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcaccat gtcaagtctg cacaagagcc gaattgcaga tttccaggat gtcctgaagg 121 agccctcaat tgcattggaa aagctgcggg aactcagctt tagtggcatc ccctgtgagg 181 gcggactgcg gtgcctctgc tggaagattc tcttgaacta ccttcccttg gagagagcct 241 catggacctc catcctggcc aagcagaggg agctgtatgc ccagttcctg agggaaatga 301 tcatccagcc tggcattgcc aaggccaaca tgggtgtgtc cagggaggat gtgacttttg 361 aggaccatcc actcaacccc aaccctgaca gccggtggaa cacgtacttc aaggacaacg 421 aggtgctgct gcagatcgac aaagatgtcc ggaggttgtg cccagacatt tccttcttcc 481 agagggccac tgactaccct tgcctcctca tcctggaccc ccagaatgag tttgaaaccc 541 ttcgtaagag agtggaacag acaacactga aatctcagac ggtggcccgg aaccggagtg 601 gggtcacaaa tatgagctcc ccacacaaga actctgcgcc atcatcccta aatgagtatg 661 aggtgctgcc caatggctgt gaggcccact gggaggtggt ggagcggatc ctgttcatct 721 acgccaagct caaccctggc atcgcttatg tgcaaggcat gaatgaaatc gtggggcccc 781 tctactacac ctttgccacc gaccccaata gtgagtggaa agagcacgcc gaggcagaca 841 cctttttctg cttcaccaac ctcatggccg agatccggga caactttatc aagagcctgg 901 atgactcgca gtgtggcatc acctacaaga tggagaaggt ttactccacc ttgaaagata 961 aggatgtgga gctctacctg aaactgcaag agcagaacat caagcctcag ttctttgcct 1021 tccgctggct gacactgctg ctgtcccagg agttcttgct gcctgacgtc atccgcatct 1081 gggactccct cttcgccgat gacaaccgct ttgacttcct cctcctcgtc tgctgcgcca 1141 tgctcatgct gatccgggag cagttgctgg aaggggactt cactgtgaat atgcggctgc 1201 tgcaggacta ccccatcaca gatgtctgcc agatcctgca gaaagccaag gagctccaag 1261 actcaaagtn nccaactttc ttgtacaaag ttggcattat aagaaagcat tgcttatcaa 1321 tttgttgcaa cgaac