Construct: ORF ccsbBroadEn_15875

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015353.1_s300c1, BRDN0000396039
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NSD3 (54904)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54904 NSD3 nuclear receptor binding SE... NM_017778.2 100% 100%
2 human 54904 NSD3 nuclear receptor binding SE... NM_023034.2 44.3% 43.3% (many diffs)
3 mouse 234135 Nsd3 nuclear receptor binding SE... NM_001001735.2 88.5% 91.6% (many diffs)
4 mouse 234135 Nsd3 nuclear receptor binding SE... NM_001308481.1 88.5% 91.6% (many diffs)
5 mouse 234135 Nsd3 nuclear receptor binding SE... NM_001308482.1 83.8% 85.6% (many diffs)
6 mouse 234135 Nsd3 nuclear receptor binding SE... XM_017312681.1 41.3% 41.7% (many diffs)
7 mouse 234135 Nsd3 nuclear receptor binding SE... XM_017312680.1 41% 41.4% (many diffs)
8 mouse 234135 Nsd3 nuclear receptor binding SE... XM_017312678.1 39.9% 40.3% (many diffs)
9 mouse 234135 Nsd3 nuclear receptor binding SE... NM_001081269.2 39.6% 40% (many diffs)
10 mouse 234135 Nsd3 nuclear receptor binding SE... XM_017312676.1 39.6% 40% (many diffs)
11 mouse 234135 Nsd3 nuclear receptor binding SE... XM_017312677.1 39.6% 40% (many diffs)
12 mouse 234135 Nsd3 nuclear receptor binding SE... XM_017312679.1 38.2% 38.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2001
ORF length:
1935
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgga tttctctttc tctttcatgc aagggatcat gggaaacaca attcagcaac
121cacctcaact cattgactcc gccaacatcc gtcaggagga tgcctttgat aacaacagtg
181acattgctga agatggtggc cagacaccat atgaagctac tttgcagcaa ggctttcagt
241acccagctac aacagaagat cttcctccac tcacaaatgg gtatccatca tcaatcagtg
301tgtatgaaac tcaaaccaaa taccagtcat ataatcagta tcctaatggg tcagccaatg
361gctttggtgc agttagaaac tttagcccca ctgactatta tcattcagaa attccaaaca
421caagaccaca tgaaattctg gaaaaacctt cccctccaca gccaccacct cctccttcgg
481taccacaaac tgtgattcca aagaagactg gctcacctga aattaaacta aaaataacca
541aaactatcca gaatggcagg gaattgtttg agtcttccct ttgtggagac cttttaaatg
601aagtacaggc aagtgagcac acgaaatcaa agcatgaaag cagaaaagaa aagaggaaaa
661aaagcaacaa gcatgactca tcaagatctg aagagcgcaa gtcacacaaa atccccaaat
721tagaaccaga ggaacaaaat agaccaaatg agagggttga cactgtatca gaaaaaccaa
781gggaagaacc agtactaaaa gaggaagccc cagttcagcc aatactatct tctgttccaa
841caacggaagt gtccactggt gttaagtttc aggttggcga tcttgtgtgg tccaaggtgg
901gaacctatcc ttggtggcct tgtatggttt caagtgatcc ccagcttgag gttcatacta
961aaattaacac aagaggtgcc cgagaatatc atgtccagtt ttttagcaac cagccagaga
1021gggcgtgggt tcatgaaaaa cgggtacgag agtataaagg tcataaacag tatgaagaat
1081tactggctga ggcaaccaaa caagccagca atcactctga gaaacaaaag attcggaaac
1141cccgacctca gagagaacgt gctcagtggg atattggcat tgcccatgca gagaaagcat
1201tgaaaatgac tcgagaagaa agaatagaac agtatacttt tatttacatt gataaacagc
1261ctgaagaggc tttatcccaa gcaaaaaaga gtgttgcctc caaaaccgaa gttaaaaaaa
1321cccgacgacc aagatctgtg ctgaatactc agccagaaca gaccaatgca ggggaggtgg
1381cctcctcact ctcaagtact gaaattcgga gacatagcca gaggcggcac acaagtgcgg
1441aagaggaaga gccaccgcct gttaaaatag cctggaaaac tgcggcagca aggaaatcct
1501taccagcttc cattacgatg cacaaaggga gcctggattt gcagaagtgt aacatgtctc
1561cagttgtgaa aattgaacaa gtgtttgctc ttcagaatgc tacaggggat gggaaattta
1621tcgatcaatt tgtttattca acaaagggaa ttggtaacaa aacagaaata agtgtcaggg
1681ggcaagacag gcttataatt tctacaccaa accagagaaa tgaaaagcca acgcagagtg
1741tatcatctcc tgaagcaaca tctggttcta caggctcagt agaaaagaag caacagagaa
1801gatcaattag aactcgttct gaatcagaga aatccactga ggttgtgcca aagaagaaga
1861tcaaaaagga gcaggttgaa acagttcctc aggctacagt gaagactgga ttacagaaag
1921ggtcggcgga ccggggagtg cagggctctg tcagattcag tgacagctcc gtctccgcag
1981cgattgagga aactgtggac tnnccaactt tcttgtacaa agttggcatt ataagaaagc
2041attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)