Construct: ORF ccsbBroadEn_15899

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011221.1_s300c1, BRDN0000390958
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ASIC4 (55515)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55515 ASIC4 acid sensing ion channel su... XM_017004439.1 84.9% 76.3% (many diffs)
2 human 55515 ASIC4 acid sensing ion channel su... NM_018674.5 41.3% 37.7% (many diffs)
3 human 55515 ASIC4 acid sensing ion channel su... NM_182847.2 38.5% 34.9% (many diffs)
4 mouse 241118 Asic4 acid-sensing (proton-gated)... NM_183022.3 46.7% 45.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
954
ORF length:
888
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatggg cagtggcctg gagatcatgc tggacatcca gcaggaggag tacctgccca
121tctggaggga gacaaatgag acgtcgtttg aggcaggtat tcgggtgcag atccacagcc
181aggaggagcc gccctacatc caccagctgg ggttcggggt gtccccaggc ttccagacct
241ttgtgtcctg ccaggaacag cggctgacct acctgcccca gccctggggc aactgccgcg
301cagagagtga gctcagggag cctgagcttc agggctactc ggcctacagt gtgtctgcct
361gccggctgcg ctgtgaaaag gaggccgtgc ttcagcgctg ccactgccgg atggtgcaca
421tgccaggcaa tgagaccatc tgcccaccaa atatctacat cgagtgtgca gaccacacac
481tggactccct gggtgggggc cctgagggcc cgtgcttctg ccccaccccc tgcaacctga
541cacgctatgg gaaagagatc tccatggtca ggatccccaa caggggctca gcccggtacc
601tggcgaggaa gtacaaccgc aacgagacct acatacggga gaacttcctg gtcctagatg
661tcttctttga ggccctgacc tctgaagcca tggagcagcg agcagcctat ggcctgtcag
721ccctgctggg agacctcggg ggacagatgg gcctgttcat tggggccagc atcctcacgt
781tgctggagat cctcgactac atctatgagg caagggccct ggagaaggca gggtgggagt
841gggggccgtg ggcaaagcag aagggggcag tgcggggtgc ctggtggagc tggcctggct
901ggaaagtcag gttcagggtt ctctgccagg gtcccctgac tggctggcag gcctnnccaa
961ctttcttgta caaagttggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)