Construct: ORF ccsbBroadEn_15905

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016932.1_s300c1, BRDN0000385531
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KIF16B (55614)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55614 KIF16B kinesin family member 16B NM_001199865.2 13.6% 13.5% (many diffs)
2 human 55614 KIF16B kinesin family member 16B XM_005260755.3 13.5% 13.3% (many diffs)
3 human 55614 KIF16B kinesin family member 16B XM_005260754.3 13.4% 13.4% 1_3372del
4 human 55614 KIF16B kinesin family member 16B NM_024704.5 13.2% 13.2% 1_3339del;3620_3709del
5 human 55614 KIF16B kinesin family member 16B XM_005260753.3 13.1% 13.1% 1_3372del;3653_3742del
6 human 55614 KIF16B kinesin family member 16B XM_017027926.1 11.7% 10.7% (many diffs)
7 human 55614 KIF16B kinesin family member 16B XM_006723588.3 11.6% 10.6% (many diffs)
8 mouse 16558 Kif16b kinesin family member 16B XM_006498819.3 11.6% 12.1% (many diffs)
9 mouse 16558 Kif16b kinesin family member 16B NM_001081133.2 11.2% 11.6% (many diffs)
10 mouse 16558 Kif16b kinesin family member 16B XM_006498817.3 11.1% 11.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
588
ORF length:
522
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgga tgccaggatc aatgcttaca ttgaagaaga agtccaaaga cgccttcagg
121atttgcatcg tgtgattagt gaaggctgca gtacatctgc agacacgatg aaggataatg
181agaaacttca caatggcacc attcaacgta aactaaaata tgagcggatg gtttctcgct
241ctttgggcgc aaatccagat gacctgaagg acccaattaa aattagtatc ccacgctacg
301tcctctgcgg gcaaggaaag gatgcacact tcgagtttga ggtcaagctt gctgcccttg
361aatttcctcc aaagaaacta tttggaaata aggatgaacg tgtgattgct gagagacgaa
421gtcacttaga gaaatacctc agggactttt tcagcgtgat gctccagtcc gcaacatctc
481ccctccacat caacaaagtg ggactgactc tctcgaaaca taccatttgt gagttttcac
541cattcttcaa gaaaggagtc tttgactaca gcagccacgg gacggggtnn ccaactttct
601tgtacaaagt tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)