Construct: ORF ccsbBroadEn_15913
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007678.1_s300c1, BRDN0000388560
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- AGK (55750)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55750 | AGK | acylglycerol kinase | NM_001364948.2 | 17.2% | 14% | (many diffs) |
| 2 | human | 55750 | AGK | acylglycerol kinase | NM_018238.4 | 14.2% | 11.6% | (many diffs) |
| 3 | human | 55750 | AGK | acylglycerol kinase | XM_011516397.3 | 14.2% | 11.6% | (many diffs) |
| 4 | human | 55750 | AGK | acylglycerol kinase | XM_024446835.1 | 14.2% | 11.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 261
- ORF length:
- 195
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgac ggtgttcttt aaaacgcttc gaaatcactg gaagaaaact acagctgggc 121 tctgcctgct gacctgggga ggccattggc tctatggaaa acactgtgat aacctcctaa 181 ggagagcagc ctgtcaagaa gctcagcact atcaggatga atcacgctgg gagccaactc 241 tgagtagaac tccaggaagt tnnccaactt tcttgtacaa agttggcatt ataagaaagc 301 attgcttatc aatttgttgc aacgaac