Construct: ORF ccsbBroadEn_16045
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000057.1_s300c1, BRDN0000388501
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF503 (84858)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84858 | ZNF503 | zinc finger protein 503 | NM_032772.6 | 94.2% | 94.2% | 66A>C;695_805del |
| 2 | mouse | 218820 | Zfp503 | zinc finger protein 503 | NM_145459.3 | 84% | 90.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1893
- ORF length:
- 1827
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgag cacagcgccc tcgctttctg ccctaagaag cagtaagcac agcggcggcg 121 gcggcggcgg cggcggaggc ggcggtgcag accctgcctg gaccagcgcg ctctctggaa 181 atagctccgg ccccggccca ggctcgtccc cggccggcag caccaagcct tttgtgcacg 241 ccgtgccccc ctctgacccc ctgcgccagg ccaaccgcct gccaatcaag gtgctgaaga 301 tgctgacggc acgaactggc cacattttgc accccgagta cctgcagccc ctgccttcca 361 cgccggtcag ccccatcgag ctcgatgcca agaagagccc gctggcgctg ttggcgcaaa 421 catgttcgca gatcgggaag cccgacccct cgccctcctc caaactctcc tcggttgcct 481 ccaacggggg cggcgcgggc ggtgccggcg gcggtgctgc gggcgacaag gacaccaaat 541 cgggccccct gaagctgagc gacatcggcg tggaggacaa gtcgagtttc aagccgtact 601 ccaaacccgg ctcggataag aaggagccgg gaggcggcgg tggaggcggt ggcggtggcg 661 ggggcggcgg cgggggtgtt tcgtcggaga agtcgggatt ccgggtaccg agcgccacct 721 gccagccatt cacgcccagg acaggcagcc cgagctccag cgcctcggcc gaagggggac 781 ccacggggct ggcacacggc cggattagct gcggcggcgg gattaatgtg gatgtgaacc 841 agcatccgga tgggggcccg ggaggcaagg ctctgggctc ggactgcggc ggttcatcgg 901 gctccagctc cggctccggc cccagcgcgc ccacctcctc ctcagtgttg ggctctgggc 961 tggtggctcc cgtgtcaccc tacaagccgg gccagacagt gttccctctg cctcccgcgg 1021 gtatgaccta cccaggcagc ctggccgggg cctacgccgg ctacccgccc cagttcctgc 1081 cacacggcgt ggcacttgac cccaccaagc cgggcagcct ggtgggggcg cagctggcgg 1141 cggccgcggc cgggtctctg ggctgcagta agccggccgg ctccagccct ttggccggag 1201 cgtctccgcc gtccgtgatg acagccagtt tgtgccggga cccttactgc ctcagctacc 1261 actgcgctag ccacctggca ggggcggcgg ccgccagcgc ttcttgcgca catgatccgg 1321 ctgctgcggc tgcggcgctg aagtccggat acccgctggt gtaccccacg cacccgctgc 1381 acggtgtgca ctcctcgcta acggccgccg cggctgctgg cgccacaccg ccctccctgg 1441 ccggccaccc cctctacccc tacggcttta tgctccctaa cgacccactc ccccacatct 1501 gcaactgggt gtcggccaac gggccgtgcg acaagcgctt cgccacgtcc gaagagctgc 1561 tgagccactt gcggacccat acggcatttc ccgggacaga caaactgctg tcgggctacc 1621 ccagctcgtc gtctctggcc agcgctgccg cggccgccat ggcttgccac atgcacatcc 1681 ccacctcggg cgcaccgggc agccctggga cgctggcgct gcgcagcccc caccacgcgc 1741 tgggactcag cagccgctac cacccctact ccaagagccc gcttcccacg cctggcgccc 1801 ccgtgccggt gcccgccgcc accggaccgt actactcccc ctacgccctc tacggacaga 1861 gactgaccac cgcctcggcg ctggggtatc agtnnccaac tttcttgtac aaagttggca 1921 ttataagaaa gcattgctta tcaatttgtt gcaacgaac