Construct: ORF ccsbBroadEn_16060

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011769.1_s300c1, BRDN0000395308
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SPSB3 (90864)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 90864 SPSB3 splA/ryanodine receptor dom... NM_001324081.1 63.8% 63.9% 1_384del;633A>G
2 human 90864 SPSB3 splA/ryanodine receptor dom... NM_080861.4 63.8% 63.9% 1_384del;633A>G
3 human 90864 SPSB3 splA/ryanodine receptor dom... XM_005255673.5 55.2% 55.3% 1_549del;798A>G
4 mouse 79043 Spsb3 splA/ryanodine receptor dom... XM_006525170.3 49.7% 52.8% (many diffs)
5 mouse 79043 Spsb3 splA/ryanodine receptor dom... XM_011246733.2 49.7% 52.8% (many diffs)
6 mouse 79043 Spsb3 splA/ryanodine receptor dom... NM_001163751.1 48.8% 52% (many diffs)
7 mouse 79043 Spsb3 splA/ryanodine receptor dom... NM_027141.2 48.3% 51.5% (many diffs)
8 mouse 79043 Spsb3 splA/ryanodine receptor dom... XM_006525169.3 46% 48.9% (many diffs)
9 mouse 79043 Spsb3 splA/ryanodine receptor dom... XM_006525168.3 45.6% 48.4% (many diffs)
10 mouse 79043 Spsb3 splA/ryanodine receptor dom... NM_001163750.1 37.6% 40.1% (many diffs)
11 mouse 79043 Spsb3 splA/ryanodine receptor dom... XM_006525165.3 36% 38.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
750
ORF length:
681
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcaccat ggagtacagc tgcggcacag cggccatccg gggcaccaag gagctggggg
121agggccagca cttctgggag atcaagatga cctctcccgt ctacggcacc gacatgatgg
181tgggcatcgg gacgtcggat gtggacctgg acaaataccg ccacacgttc tgcagcctgc
241tgggcaggga tgaggacagc tggggcctct cctacacggg cctcctccac cacaagggcg
301acaagaccag cttctcgtcg cggttcggcc agggctccat cattggcgtg cacctggaca
361cctggcacgg cacactcacc tttttcaaga acaggaagtg tataggtgtg gcagccacca
421agctgcagaa caagagattc tacccgatgg tgtgctccac ggcggcccgg agcagcatga
481aggtcacccg ctcctgtgcc agcgccactt ccctccagta cctgtgctgc caccgcctgc
541gccagctgcg gccagactcg ggagacacgc tggagggtct gccgctgccg ccgggcctca
601agcaggtgct acacaacaag ctgggctggg tcctgagcat gagttgcagc cgccgcaagg
661ctccagtgtc cgatccccag gcagcgacct ccgcccaccc cagcagtcgc gagcctcggc
721cctgccagag gaagcgctgc cgccggacct tgccaacttt cttgtacaaa gttggcatta
781taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)

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