Construct: ORF ccsbBroadEn_16117
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005384.1_s300c1, BRDN0000393464
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- WBP2NL (164684)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 164684 | WBP2NL | WBP2 N-terminal like | NM_152613.3 | 64.6% | 50.3% | 362A>G;475delG;602_927del |
| 2 | human | 164684 | WBP2NL | WBP2 N-terminal like | XR_430402.2 | 35.3% | (many diffs) | |
| 3 | human | 164684 | WBP2NL | WBP2 N-terminal like | XR_244353.5 | 11.8% | (many diffs) | |
| 4 | human | 164684 | WBP2NL | WBP2 N-terminal like | XR_937829.3 | 11.7% | (many diffs) | |
| 5 | human | 164684 | WBP2NL | WBP2 N-terminal like | XR_937827.3 | 10.6% | (many diffs) | |
| 6 | human | 164684 | WBP2NL | WBP2 N-terminal like | XR_937830.3 | 9.6% | (many diffs) | |
| 7 | human | 164684 | WBP2NL | WBP2 N-terminal like | XR_244354.5 | 9.3% | (many diffs) | |
| 8 | human | 164684 | WBP2NL | WBP2 N-terminal like | XR_937828.3 | 9.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 666
- ORF length:
- 600
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatggc ggtgaatcag agccacaccg agaaccgccg cggagccctc atccctaacg 121 gtgaaagtct cttgaagcgg tctccgaatg tggagctctc cttcccacag cgatcagaag 181 gctcaaatgt ctttagtggt agaaagacag gaacattgtt tctcacttca taccgggtga 241 ttttcataac ttcatgctcc atcagtgatc ccatgttgtc ttttatgatg ccatttgatc 301 tgatgacgaa cctcactgtt gaacaaccag tatttgctgc aaacttcatt aagggaacta 361 ttcaggcagc tccatatggt ggctgggaag gacaagctac ttttaaatta gtcttcagaa 421 atggaggtgc cattgaattt gcccagttga tggtgaaagc tgcctctgct gctgcccgag 481 gatttccact tagaacctta aatgactggt tcagctctat gggaatttat gtaattactg 541 ggaagggaat atgtgcactc cacagatgcc ttgttcagtt attgtctatg gagccccacc 601 tgcaggatat ggagccccac ctcccggata cggagcccca cctgcaggat atggagccca 661 acccgtnncc aactttcttg tacaaagttg gcattataag aaagcattgc ttatcaattt 721 gttgcaacga ac