Construct: ORF ccsbBroadEn_16137

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005735.1_s300c1, BRDN0000390899
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FRMD3 (257019)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 257019 FRMD3 FERM domain containing 3 NM_001244962.2 100% 100%
2 human 257019 FRMD3 FERM domain containing 3 XM_017014591.2 83.8% 82.2% (many diffs)
3 human 257019 FRMD3 FERM domain containing 3 NM_001244961.1 52.8% 46% (many diffs)
4 human 257019 FRMD3 FERM domain containing 3 XM_017014589.1 47.5% 40.5% (many diffs)
5 human 257019 FRMD3 FERM domain containing 3 XM_024447487.1 38.4% 32.7% (many diffs)
6 human 257019 FRMD3 FERM domain containing 3 XM_024447488.1 38.4% 32.7% (many diffs)
7 human 257019 FRMD3 FERM domain containing 3 XM_024447489.1 38.4% 32.7% (many diffs)
8 human 257019 FRMD3 FERM domain containing 3 NM_001244960.1 34.8% 29.7% (many diffs)
9 human 257019 FRMD3 FERM domain containing 3 NM_001244959.2 34.6% 30.2% (many diffs)
10 human 257019 FRMD3 FERM domain containing 3 XM_017014588.1 34.6% 29.5% (many diffs)
11 human 257019 FRMD3 FERM domain containing 3 NM_174938.6 32.3% 27.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
705
ORF length:
639
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgca ggccgaggag accaagggga ttggaataac cagtatggca aaatgcttgg
121tcaagatcca gactcgacga agcctccaat tgcacatggt gaaccactgc aacagtaatg
181tgtttgttcg tctgctgaga ctcggctcca aggtcacagc tcgtaacact ggtgttccat
241tgcctaaaga ggagaacatt tctgctccct tgatctccag ctccccagtg aaggcagccc
301gggagtatga agatccccct agtgaagagg aagataaaat aaaagaagaa cctttaacca
361tctctgaact agtgtacaac ccaagtgcca gcctgctccc cacccctgtg gatgacgatg
421agattgacat gctctttgac tgtccttcta ggcttgagtt ggaaagagaa gacacagatt
481catttgagga tctggaagca gatgaaaacg cctttttgat tgctgaagaa gaggagctga
541aggaggctcg ccgtgctttg tcgtggagct atgacattct gactggccat attcgggtga
601acccactggt caagagtttt tccaggctcc ttgtggtggg cctgggactg ctgctctttg
661tatttcccct gctcctcctc cttttggagt cagtctccat gcagtnncca actttcttgt
721acaaagttgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)