Construct: ORF ccsbBroadEn_16162
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004325.1_s300c1, BRDN0000397232
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ATP9B (374868)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 374868 | ATP9B | ATPase phospholipid transpo... | XM_017025742.1 | 19.5% | 19.5% | 1_159del;562_582del;589_2088del |
2 | human | 374868 | ATP9B | ATPase phospholipid transpo... | XM_017025737.1 | 13.1% | 13.1% | 1_159del;562_582del;589_3099del |
3 | human | 374868 | ATP9B | ATPase phospholipid transpo... | XM_017025736.2 | 13% | 13% | 1_159del;562_582del;589_3135del |
4 | human | 374868 | ATP9B | ATPase phospholipid transpo... | XM_017025735.2 | 12.8% | 12.8% | 1_159del;562_582del;589_3177del |
5 | human | 374868 | ATP9B | ATPase phospholipid transpo... | XM_017025734.1 | 12.7% | 12.7% | 1_159del;562_582del;589_3201del |
6 | human | 374868 | ATP9B | ATPase phospholipid transpo... | XM_017025733.1 | 12.4% | 12.4% | 1_159del;562_582del;589_3288del |
7 | human | 374868 | ATP9B | ATPase phospholipid transpo... | XM_017025732.1 | 12.2% | 12.2% | 1_159del;562_582del;589_3321del |
8 | human | 374868 | ATP9B | ATPase phospholipid transpo... | XM_017025731.1 | 12% | 12% | 1_159del;562_582del;589_3399del |
9 | human | 374868 | ATP9B | ATPase phospholipid transpo... | XM_011525965.2 | 11.9% | 11.9% | 1_39del;442_462del;469_3402del |
10 | human | 374868 | ATP9B | ATPase phospholipid transpo... | XM_011525966.2 | 11.9% | 11.9% | 1_39del;442_462del;469_3402del |
11 | human | 374868 | ATP9B | ATPase phospholipid transpo... | NM_001306085.2 | 11.9% | 11.9% | 1_156del;559_579del;586_3408del |
12 | human | 374868 | ATP9B | ATPase phospholipid transpo... | XM_017025730.1 | 11.9% | 11.9% | 1_159del;562_582del;589_3411del |
13 | human | 374868 | ATP9B | ATPase phospholipid transpo... | XM_017025729.1 | 11.8% | 11.8% | 1_159del;562_582del;589_3435del |
14 | human | 374868 | ATP9B | ATPase phospholipid transpo... | NM_198531.5 | 11.8% | 11.8% | 1_156del;559_579del;586_3441del |
15 | human | 374868 | ATP9B | ATPase phospholipid transpo... | XM_017025728.2 | 11.8% | 11.8% | 1_159del;562_582del;589_3444del |
16 | human | 374868 | ATP9B | ATPase phospholipid transpo... | XM_017025727.1 | 11.6% | 11.6% | 1_159del;562_582del;589_3489del |
17 | human | 374868 | ATP9B | ATPase phospholipid transpo... | XM_017025726.1 | 11.6% | 11.6% | 1_159del;562_582del;589_3507del |
18 | human | 374868 | ATP9B | ATPase phospholipid transpo... | XM_011525964.2 | 11.5% | 11.5% | 1_156del;559_579del;586_3519del |
19 | human | 374868 | ATP9B | ATPase phospholipid transpo... | XM_011525963.2 | 11.5% | 11.5% | 1_159del;562_582del;589_3522del |
20 | human | 374868 | ATP9B | ATPase phospholipid transpo... | XR_001753192.1 | 11.2% | 1_458del;861_881del;888_3629del | |
21 | human | 374868 | ATP9B | ATPase phospholipid transpo... | XR_001753198.1 | 10.7% | 1_173del;576_596del;603_3785del | |
22 | human | 374868 | ATP9B | ATPase phospholipid transpo... | XR_001753195.2 | 10.6% | 1_161del;564_584del;591_3816del | |
23 | human | 374868 | ATP9B | ATPase phospholipid transpo... | XR_002958170.1 | 10.3% | 1_161del;564_584del;591_3932del | |
24 | human | 374868 | ATP9B | ATPase phospholipid transpo... | XR_002958169.1 | 10% | 1_161del;564_584del;591_4049del | |
25 | human | 374868 | ATP9B | ATPase phospholipid transpo... | XR_001753194.1 | 8.6% | 1_458del;861_881del;888_4734del | |
26 | human | 374868 | ATP9B | ATPase phospholipid transpo... | XR_001753193.1 | 8.5% | 1_458del;861_881del;888_4767del | |
27 | human | 374868 | ATP9B | ATPase phospholipid transpo... | NR_148360.2 | 8.4% | 1_173del;576_596del;603_4828del | |
28 | mouse | 50771 | Atp9b | ATPase, class II, type 9B | NM_015805.3 | 10.9% | 11.1% | (many diffs) |
29 | mouse | 50771 | Atp9b | ATPase, class II, type 9B | NM_001201569.1 | 10.8% | 10.9% | (many diffs) |
30 | mouse | 50771 | Atp9b | ATPase, class II, type 9B | XM_006526507.2 | 10.7% | 10.8% | (many diffs) |
31 | mouse | 50771 | Atp9b | ATPase, class II, type 9B | XM_006526506.2 | 10.6% | 10.7% | (many diffs) |
32 | mouse | 50771 | Atp9b | ATPase, class II, type 9B | XR_001782382.1 | 8.1% | (many diffs) | |
33 | mouse | 50771 | Atp9b | ATPase, class II, type 9B | XR_001782381.1 | 8.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 474
- ORF length:
- 408
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgcc actaatgatg tctgaagaag gctttgagaa tgaggaaagt gattaccaca 121 ccttaccacg agccaggata atgcaaagga aaagaggact ggagtggttt gtctgtgatg 181 gctggaagtt cctctgtacc agttgctgtg gttggctgat aaatatttgt cgaagaaaga 241 aagagctgaa agctcgcaca gtatggcttg gatgtcctga aaagtgtgaa gaaaaacatc 301 ccaggaattc tataaaaaat caaaaataca atgtgtttac ctttatacct ggggttttgt 361 atgaacaatt caagtttttc ttgaatctct attttctagt aatatcctgc tcacagtttg 421 taccagcatt gaaaataggc tatctctaca cctactgggc tcctctgatg acatnnccaa 481 ctttcttgta caaagttggc attataagaa agcattgctt atcaatttgt tgcaacgaac