Transcript: Human NM_000163.5

Homo sapiens growth hormone receptor (GHR), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
GHR (2690)
Length:
4899
CDS:
529..2445

Additional Resources:

NCBI RefSeq record:
NM_000163.5
NBCI Gene record:
GHR (2690)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_000163.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000058847 GCCATTCATGATAGCTATAAA pLKO.1 1507 CDS 100% 15.000 21.000 N GHR n/a
2 TRCN0000445521 TGTGACATGCACCCGGAAATG pLKO_005 2068 CDS 100% 10.800 15.120 N GHR n/a
3 TRCN0000058846 GCACCACGCAATGCAGATATT pLKO.1 1057 CDS 100% 13.200 10.560 N GHR n/a
4 TRCN0000438271 CTCACCAAGCTGCCCATATTC pLKO_005 1928 CDS 100% 13.200 9.240 N GHR n/a
5 TRCN0000431190 TCTTCTAAGGAGCCTAAATTC pLKO_005 667 CDS 100% 13.200 9.240 N GHR n/a
6 TRCN0000058843 CCAGACTATACCTCCATTCAT pLKO.1 2305 CDS 100% 5.625 3.938 N GHR n/a
7 TRCN0000058844 CCATCTGGATACCTTATTGTA pLKO.1 887 CDS 100% 5.625 3.938 N GHR n/a
8 TRCN0000058845 GCTCCTCACATCAAGGTTGAA pLKO.1 2167 CDS 100% 4.950 3.465 N GHR n/a
9 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 4202 3UTR 100% 5.625 2.813 Y KLHL30 n/a
10 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 4202 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_000163.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.