Transcript: Mouse NM_001002900.1

Mus musculus HIG1 domain family, member 1C (Higd1c), mRNA.

Source:
NCBI, updated 2017-05-13
Taxon:
Mus musculus (mouse)
Gene:
Higd1c (380975)
Length:
506
CDS:
52..342

Additional Resources:

NCBI RefSeq record:
NM_001002900.1
NBCI Gene record:
Higd1c (380975)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001002900.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000252108 TCTATGTATAAGGACTATATC pLKO_005 289 CDS 100% 13.200 6.600 Y Higd1c n/a
2 TRCN0000215353 CTACGGTCTTTACAAGCTAAA pLKO.1 171 CDS 100% 10.800 5.400 Y Higd1c n/a
3 TRCN0000252109 CTACGGTCTTTACAAGCTAAA pLKO_005 171 CDS 100% 10.800 5.400 Y Higd1c n/a
4 TRCN0000252106 AGCCGTGACTCTAGGTGTTCT pLKO_005 264 CDS 100% 4.950 2.475 Y Higd1c n/a
5 TRCN0000198659 CTATATCAGACCTCGGTTCTT pLKO.1 303 CDS 100% 4.950 2.475 Y Higd1c n/a
6 TRCN0000252105 GACCTCGGTTCTTCAATGTAC pLKO_005 311 CDS 100% 4.950 2.475 Y Higd1c n/a
7 TRCN0000252107 TGTCCCGACTCCTCCGGAAAT pLKO_005 95 CDS 100% 3.600 1.800 Y Higd1c n/a
8 TRCN0000198869 GCTAAATTCCAGAAGAGAGCA pLKO.1 186 CDS 100% 2.640 1.320 Y Higd1c n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001002900.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.