Transcript: Mouse NM_001005475.2

Mus musculus IQ motif and Sec7 domain 2 (Iqsec2), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-06-04
Taxon:
Mus musculus (mouse)
Gene:
Iqsec2 (245666)
Length:
5208
CDS:
57..2906

Additional Resources:

NCBI RefSeq record:
NM_001005475.2
NBCI Gene record:
Iqsec2 (245666)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001005475.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000440082 AGTAGTCTGGAGGACACTTAT pLKO_005 2808 CDS 100% 13.200 18.480 N Iqsec2 n/a
2 TRCN0000110126 CCTCCTCAATACCGATATGTA pLKO.1 2108 CDS 100% 5.625 7.875 N Iqsec2 n/a
3 TRCN0000110127 GAAAGGTATGATGCGGCCTAA pLKO.1 2735 CDS 100% 4.050 2.835 N Iqsec2 n/a
4 TRCN0000140363 GAAAGGTATGATGCGGCCTAA pLKO.1 2735 CDS 100% 4.050 2.835 N IQSEC2 n/a
5 TRCN0000110125 GCAGTGTCTTTCTTTCCACTT pLKO.1 3968 3UTR 100% 4.050 2.835 N Iqsec2 n/a
6 TRCN0000110129 TCATCATCTTTAATGCTCCTA pLKO.1 2614 CDS 100% 2.640 1.848 N Iqsec2 n/a
7 TRCN0000110128 GTACCGTATGAATAAGAACTT pLKO.1 521 CDS 100% 0.000 0.000 N Iqsec2 n/a
8 TRCN0000441327 CTTTCCTGGGCTCCCTATTTG pLKO_005 2999 3UTR 100% 13.200 7.920 N Iqsec2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001005475.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.