Transcript: Mouse NM_001011803.2

Mus musculus olfactory receptor 1306 (Olfr1306), mRNA.

Source:
NCBI, updated 2012-08-25
Taxon:
Mus musculus (mouse)
Gene:
Olfr1306 (258023)
Length:
939
CDS:
1..939

Additional Resources:

NCBI RefSeq record:
NM_001011803.2
NBCI Gene record:
Olfr1306 (258023)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001011803.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000203010 GTCATCATAATCACTGTGCAA pLKO.1 658 CDS 100% 2.640 1.848 N Olfr1306 n/a
2 TRCN0000187111 CCGAGGATGTGCATCTTGTTT pLKO.1 412 CDS 100% 5.625 3.375 N Olfr1306 n/a
3 TRCN0000185979 CAGGTTGTGTTACTCAAATAT pLKO.1 284 CDS 100% 15.000 7.500 Y Olfr1306 n/a
4 TRCN0000202574 CCTTCTTCATACTGATCATTT pLKO.1 629 CDS 100% 13.200 6.600 Y Olfr1306 n/a
5 TRCN0000204779 GCCATGGCCTTTGACAGATAT pLKO.1 349 CDS 100% 13.200 6.600 Y OR4F3 n/a
6 TRCN0000187951 CTTACACTCTCCCATGTACTT pLKO.1 162 CDS 100% 4.950 2.475 Y Olfr1307 n/a
7 TRCN0000189022 GACAGCTTCTACTGTGACCTT pLKO.1 523 CDS 100% 2.640 1.320 Y Olfr1307 n/a
8 TRCN0000188652 GCCATATGTAAGCCTCTCCAT pLKO.1 373 CDS 100% 0.000 0.000 Y Olfr1307 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001011803.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.