Transcript: Human NM_001012981.5

Homo sapiens zinc finger with KRAB and SCAN domains 2 (ZKSCAN2), mRNA.

Source:
NCBI, updated 2019-05-01
Taxon:
Homo sapiens (human)
Gene:
ZKSCAN2 (342357)
Length:
7437
CDS:
719..3622

Additional Resources:

NCBI RefSeq record:
NM_001012981.5
NBCI Gene record:
ZKSCAN2 (342357)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001012981.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000107354 GATTTCGAGAACATCGGAGAA pLKO.1 3420 CDS 100% 4.050 5.670 N ZKSCAN2 n/a
2 TRCN0000107353 CGAAGCAACTACGTCAAGGAA pLKO.1 1622 CDS 100% 3.000 4.200 N ZKSCAN2 n/a
3 TRCN0000107351 GCGTTCTACAAGGAGATGGAT pLKO.1 2438 CDS 100% 3.000 4.200 N ZKSCAN2 n/a
4 TRCN0000426523 GGCTGAATGGTTGCGAGAATG pLKO_005 1849 CDS 100% 10.800 8.640 N ZKSCAN2 n/a
5 TRCN0000417940 ATGAAATAGGCATCGAATTTA pLKO_005 2136 CDS 100% 15.000 10.500 N ZKSCAN2 n/a
6 TRCN0000107352 CCGCAAATGCTTCAGGCAATT pLKO.1 850 CDS 100% 10.800 7.560 N ZKSCAN2 n/a
7 TRCN0000429522 TTGCTAAGTTCGGCAACATTC pLKO_005 3901 3UTR 100% 10.800 7.560 N ZKSCAN2 n/a
8 TRCN0000107350 CCCAGTAAACACTGAAGGAAA pLKO.1 4962 3UTR 100% 4.950 3.465 N ZKSCAN2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001012981.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10035 pDONR223 100% 99.9% 99.8% None 81T>C;1845A>T n/a
2 ccsbBroad304_10035 pLX_304 0% 99.9% 99.8% V5 81T>C;1845A>T n/a
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