Transcript: Mouse NM_001013816.1

Mus musculus predicted gene 5622 (Gm5622), mRNA.

Source:
NCBI, updated 2015-02-15
Taxon:
Mus musculus (mouse)
Gene:
Gm5622 (434459)
Length:
1609
CDS:
319..822

Additional Resources:

NCBI RefSeq record:
NM_001013816.1
NBCI Gene record:
Gm5622 (434459)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001013816.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000191900 GAATTTGGCATCCTTTCTTAT pLKO.1 415 CDS 100% 13.200 7.920 N Gm5622 n/a
2 TRCN0000190557 GCTGTAAGTCTGTGCTCCTAA pLKO.1 1314 3UTR 100% 4.950 2.970 N Gm5622 n/a
3 TRCN0000347798 TAGTCTTGGGTGTCCATATTT pLKO_005 1191 3UTR 100% 15.000 7.500 Y Gm8267 n/a
4 TRCN0000347871 CCTTTGAAGAGAACTTCTATA pLKO_005 870 3UTR 100% 13.200 6.600 Y Gm8267 n/a
5 TRCN0000270589 TTGCAACATCACTAATCATAT pLKO_005 501 CDS 100% 13.200 6.600 Y Gm7247 n/a
6 TRCN0000201017 CCCAGTAATCATGGCTATCAT pLKO.1 932 3UTR 100% 5.625 2.813 Y Gm5622 n/a
7 TRCN0000181565 GAGACCAGCAAGAACATACAT pLKO.1 774 CDS 100% 5.625 2.813 Y Gm9732 n/a
8 TRCN0000176783 CGAAGCAAATATTTCATCTCA pLKO.1 909 3UTR 100% 3.000 1.500 Y 4930503E14Rik n/a
9 TRCN0000192311 CAGCAAGAACATACATCCCAA pLKO.1 779 CDS 100% 2.640 1.320 Y Gm5622 n/a
10 TRCN0000201292 GAACATACATCCCAAGTGCAA pLKO.1 785 CDS 100% 2.640 1.320 Y Gm5622 n/a
11 TRCN0000182095 GAGAACAGAAAGCTGCTGGTA pLKO.1 703 CDS 100% 2.640 1.320 Y Gm9732 n/a
12 TRCN0000190461 GAAGATAAATGCTGAGCGGGA pLKO.1 564 CDS 100% 0.540 0.270 Y Gm5622 n/a
13 TRCN0000200690 GCAACATCACTAATCATATGA pLKO.1 503 CDS 100% 0.000 0.000 Y 1700024B05Rik n/a
14 TRCN0000192850 GCAAAGACTTTGAGCCAAATT pLKO.1 1151 3UTR 100% 13.200 6.600 Y 1700024B05Rik n/a
15 TRCN0000177404 GCAAGAACATACATCCCAAAT pLKO.1 781 CDS 100% 10.800 5.400 Y Gm9732 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001013816.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.