Transcript: Mouse NM_001024703.1

Mus musculus multiple C2 domains, transmembrane 2 (Mctp2), mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Mctp2 (244049)
Length:
5810
CDS:
194..2830

Additional Resources:

NCBI RefSeq record:
NM_001024703.1
NBCI Gene record:
Mctp2 (244049)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001024703.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000414065 TTCATCCCTCTACGGTATATC pLKO_005 2630 CDS 100% 13.200 18.480 N Mctp2 n/a
2 TRCN0000426162 GTCAAATCGGAAGCGGTTAAG pLKO_005 1168 CDS 100% 10.800 15.120 N Mctp2 n/a
3 TRCN0000026940 GAACCCAATTTGGGATGAGAT pLKO.1 907 CDS 100% 4.950 6.930 N Gm1455 n/a
4 TRCN0000026890 GCATTTGTCGTTCTCAGAGAT pLKO.1 1016 CDS 100% 4.950 6.930 N Gm1455 n/a
5 TRCN0000028228 CCTCATATATAATCCGGTCAA pLKO.1 2068 CDS 100% 4.050 5.670 N Mctp2 n/a
6 TRCN0000028257 CCTTATTCCATCGACAATAAT pLKO.1 2696 CDS 100% 1.500 1.200 N Mctp2 n/a
7 TRCN0000419035 CAAGCAAACCTTTGGATTTAA pLKO_005 288 CDS 100% 15.000 10.500 N Mctp2 n/a
8 TRCN0000026873 TGGGAGTGATTGTGTTAAATT pLKO.1 1104 CDS 100% 15.000 10.500 N Gm1455 n/a
9 TRCN0000425813 AGCGAACCAGACCTTTGTTAA pLKO_005 234 CDS 100% 13.200 9.240 N Mctp2 n/a
10 TRCN0000427585 AGGTGTATGATCGAGACTTAA pLKO_005 972 CDS 100% 13.200 9.240 N Mctp2 n/a
11 TRCN0000419428 ATAAGAACTTGAACCCAATTT pLKO_005 897 CDS 100% 13.200 9.240 N Mctp2 n/a
12 TRCN0000028277 CCAGTGAAAGACAGCAGATTT pLKO.1 1650 CDS 100% 13.200 9.240 N Mctp2 n/a
13 TRCN0000412248 GAGACTGTGGGAGCTTCATAT pLKO_005 3058 3UTR 100% 13.200 9.240 N Mctp2 n/a
14 TRCN0000434392 TGGAATGGGATTATAAGTATA pLKO_005 1253 CDS 100% 13.200 9.240 N Mctp2 n/a
15 TRCN0000425947 TTCAATACCTTCGACAGATTT pLKO_005 3176 3UTR 100% 13.200 9.240 N Mctp2 n/a
16 TRCN0000432788 CCGACTCTGAAGAGATCTATG pLKO_005 546 CDS 100% 10.800 7.560 N Mctp2 n/a
17 TRCN0000425176 GACTTCAGACACATACCATTT pLKO_005 1818 CDS 100% 10.800 7.560 N Mctp2 n/a
18 TRCN0000026889 CGGAAGAACCAACTCTGGAAT pLKO.1 1238 CDS 100% 4.950 3.465 N Gm1455 n/a
19 TRCN0000028250 GCCTGTTTGATTCTGGCCATA pLKO.1 2591 CDS 100% 4.050 2.835 N Mctp2 n/a
20 TRCN0000026866 CCAAGTCTGATTTCATGGGTT pLKO.1 993 CDS 100% 2.640 1.848 N Gm1455 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001024703.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.