Transcript: Mouse NM_001025575.2

Mus musculus complement factor H-related 2 (Cfhr2), mRNA.

Source:
NCBI, updated 2017-05-11
Taxon:
Mus musculus (mouse)
Gene:
Cfhr2 (545366)
Length:
1619
CDS:
73..1071

Additional Resources:

NCBI RefSeq record:
NM_001025575.2
NBCI Gene record:
Cfhr2 (545366)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001025575.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000255032 GTAAACGTGGATATCAGAAAG pLKO_005 983 CDS 100% 10.800 8.640 N Cfhr2 n/a
2 TRCN0000255031 GGTTCTGATTTACAGTAAATA pLKO_005 1386 3UTR 100% 15.000 10.500 N Cfhr2 n/a
3 TRCN0000201769 GCATCCGTATCAACTCAACAA pLKO.1 680 CDS 100% 4.950 3.465 N Cfhr2 n/a
4 TRCN0000216141 CATTATCATCAGTTGACTATC pLKO.1 770 CDS 100% 10.800 6.480 N Cfhr2 n/a
5 TRCN0000255030 TATCAGTGCCAGAAGTATTAT pLKO_005 787 CDS 100% 15.000 7.500 Y Cfhr2 n/a
6 TRCN0000255033 TTTCGTACAAAGTGCATTAAT pLKO_005 1021 CDS 100% 15.000 7.500 Y Cfhr2 n/a
7 TRCN0000255029 AGGAAATAAGTACAGCTATAA pLKO_005 402 CDS 100% 13.200 6.600 Y Cfhr2 n/a
8 TRCN0000216383 GGAAATAAGTACAGCTATAAG pLKO.1 403 CDS 100% 13.200 6.600 Y Cfhr2 n/a
9 TRCN0000190808 GCATGGCTTTCTACTGCTAAA pLKO.1 118 CDS 100% 10.800 5.400 Y Cfhr2 n/a
10 TRCN0000114081 CCAAGGACAAACTATGTCAAA pLKO.1 1285 3UTR 100% 4.950 2.475 Y Cfhr1 n/a
11 TRCN0000192337 CCAAGGACAAACTATGTCAAA pLKO.1 1285 3UTR 100% 4.950 2.475 Y Cfhr2 n/a
12 TRCN0000179439 GCACCATCAATTATCCCACTT pLKO.1 1043 CDS 100% 4.050 2.025 Y Gm4788 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001025575.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.