Transcript: Mouse NM_001033782.3

Mus musculus predicted gene 5592 (Gm5592), mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Gm5592 (434172)
Length:
3033
CDS:
146..2719

Additional Resources:

NCBI RefSeq record:
NM_001033782.3
NBCI Gene record:
Gm5592 (434172)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001033782.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000270251 TAACGGAGCAGGGCCAGATTT pLKO_005 384 CDS 100% 13.200 7.920 N Gm5592 n/a
2 TRCN0000284202 CATGGGTAATGCCTATCTTAA pLKO_005 331 CDS 100% 13.200 6.600 Y Gm5592 n/a
3 TRCN0000270250 GAAGGCAGCCAGGTCTATTAC pLKO_005 671 CDS 100% 13.200 6.600 Y Gm5592 n/a
4 TRCN0000270249 CATGGAAGAAAGTCGACATTC pLKO_005 2517 CDS 100% 10.800 5.400 Y Gm5592 n/a
5 TRCN0000270202 TGCCAGATCATTGCAACAAAG pLKO_005 2725 3UTR 100% 10.800 5.400 Y Gm5592 n/a
6 TRCN0000201155 CCTGATTCTGATAATGCCCAT pLKO.1 1247 CDS 100% 2.160 1.080 Y Gm4884 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001033782.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.