Transcript: Mouse NM_001034874.3

Mus musculus shisa family member 6 (Shisa6), mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Shisa6 (380702)
Length:
7487
CDS:
163..1740

Additional Resources:

NCBI RefSeq record:
NM_001034874.3
NBCI Gene record:
Shisa6 (380702)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001034874.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000267228 TCTCGCATACGGACGTCTTTG pLKO_005 1508 CDS 100% 10.800 15.120 N Shisa6 n/a
2 TRCN0000267226 AGTATAATCATCCGATCTTAA pLKO_005 989 CDS 100% 13.200 9.240 N Shisa6 n/a
3 TRCN0000267227 CCTTATCACCATCTGGTATAA pLKO_005 4144 3UTR 100% 13.200 9.240 N Shisa6 n/a
4 TRCN0000267225 GCCCACTTGCCTCCATCATAT pLKO_005 1117 CDS 100% 13.200 9.240 N Shisa6 n/a
5 TRCN0000267224 GGTGGAGCAGTTACACTATAT pLKO_005 1668 CDS 100% 13.200 9.240 N Shisa6 n/a
6 TRCN0000166364 CACACACACACACACACACAA pLKO.1 3224 3UTR 100% 4.950 2.475 Y KAAG1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001034874.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.