Transcript: Human NM_001042492.3

Homo sapiens neurofibromin 1 (NF1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-10
Taxon:
Homo sapiens (human)
Gene:
NF1 (4763)
Length:
12373
CDS:
334..8853

Additional Resources:

NCBI RefSeq record:
NM_001042492.3
NBCI Gene record:
NF1 (4763)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001042492.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000234916 TTACGGTCAGCTGCCTATAAT pLKO_005 5938 CDS 100% 15.000 21.000 N NF1 n/a
2 TRCN0000234917 TTTAGATAGTCTCCGTATATT pLKO_005 7365 CDS 100% 15.000 21.000 N NF1 n/a
3 TRCN0000234915 TAAGCGGCCTCACTACTATTT pLKO_005 497 CDS 100% 13.200 18.480 N NF1 n/a
4 TRCN0000039717 GCTGGCAGTTTCAAACGTAAT pLKO.1 8812 CDS 100% 10.800 8.640 N NF1 n/a
5 TRCN0000234918 CTTCGAAGCCTTGCCTAAATT pLKO_005 9007 3UTR 100% 15.000 10.500 N NF1 n/a
6 TRCN0000238778 TGCGCAGTTAGCAGTTATAAA pLKO_005 954 CDS 100% 15.000 10.500 N NF1 n/a
7 TRCN0000039715 CCTCACAACAACCAACACTTT pLKO.1 1495 CDS 100% 4.950 3.465 N NF1 n/a
8 TRCN0000039713 CCATGTTGTAATGCTGCACTT pLKO.1 8935 3UTR 100% 4.050 2.835 N NF1 n/a
9 TRCN0000039714 GCCAACCTTAACCTTTCTAAT pLKO.1 8653 CDS 100% 13.200 7.920 N NF1 n/a
10 TRCN0000039716 CCTGACACTTACAACAGTCAA pLKO.1 7177 CDS 100% 4.950 2.970 N NF1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001042492.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.