Transcript: Human NM_001042690.2

Homo sapiens Myb/SANT DNA binding domain containing 1 (MSANTD1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-05-04
Taxon:
Homo sapiens (human)
Gene:
MSANTD1 (345222)
Length:
1549
CDS:
65..901

Additional Resources:

NCBI RefSeq record:
NM_001042690.2
NBCI Gene record:
MSANTD1 (345222)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001042690.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000413278 TGACGTGGCTTTGATATTAAA pLKO_005 1206 3UTR 100% 15.000 21.000 N MSANTD1 n/a
2 TRCN0000434938 TGTCGTTACTATCAATGATAC pLKO_005 1184 3UTR 100% 10.800 8.640 N MSANTD1 n/a
3 TRCN0000266761 CTTCCAGTACAGGAAATTAAA pLKO_005 373 CDS 100% 15.000 10.500 N Msantd1 n/a
4 TRCN0000135238 CGAGGAGATCAAGATCAAGAT pLKO.1 340 CDS 100% 4.950 3.465 N MSANTD1 n/a
5 TRCN0000421238 ATCACCAAGTCCAGCGTCTAG pLKO_005 881 CDS 100% 4.050 2.835 N MSANTD1 n/a
6 TRCN0000415902 CAACGCCAAGGTGTACGAGAA pLKO_005 274 CDS 100% 4.050 2.835 N MSANTD1 n/a
7 TRCN0000136807 CACCAACATGACCTTCCAGTA pLKO.1 361 CDS 100% 4.050 2.835 N MSANTD1 n/a
8 TRCN0000134909 CAAGATCAAGATCACCAACAT pLKO.1 349 CDS 100% 4.950 2.970 N MSANTD1 n/a
9 TRCN0000182247 CATGACAGATAGCGAGTCCAT pLKO.1 397 CDS 100% 2.640 1.848 N Msantd1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001042690.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.